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Remove --no-datalad-get from datalad config #215

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Jan 16, 2025
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Remove --no-datalad-get from datalad config #215

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9 changes: 9 additions & 0 deletions content/resources/tutorials/repronim-containers.md
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Expand Up @@ -136,6 +136,15 @@ specified in the `.gitmodules`. By freezing into the top-level dataset
instead, authors do not need to host a modified version of
`///reporonim/containers`.

#### Fixup datalad config

The version of mriqc we are using does not have an option `--no-datalad-get` which is hardcoded
into mriqc config, so we should remove it.

```bash
datalad run -m "Remove ad-hoc option for mriqc for older frozen version" sed -i -e 's, --no-datalad-get,,g' .datalad/config
```

### Step 5: Run the containers

When we run the bids-mriqc container, it will need a working directory
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