BIOL5153

• CV1.md

CV1.md is my resume generated using R package pagedown.

• CV2.md

CV2.md is my resume using R markdown.

• assn03

assn03 consists of some blastn (blast/2.3.0+) searches to search watermelon nad4L nucleotide sequences.

• write_razor_pbs.py

write_razor_pbs.py is a PBS python script to run in the razor cluster of AHPCC

• write_pinnacle_slurm.py

write_pinnacle_slurm.py is a slurm python script to run in the pinnacle cluster of AHPCC

• Screenshot

screen shot that shows thepwdand script commands, followed by the output of the script.

• dna.txt

dna.txt contains the DNA sequence of nad4L

• nucleotide_composition.py

a python script that estimates the frequency of the Adenine,Thymine, Guanine and Cytosine of the file dna.txt.

• parseGFF.py

Assignment 6. Using csv, argparse and biopython packages parsing a GFF file and slicing and extracting the sequence from the genome. Assignment 7. rev_comp function added that calculates reverse complement of the features that are on '-' strand. Building a coding sequence (CDS) for each gene, which consists of all the exons properly sliced together.