changing links

Changed link to HARP hardware (to pdf), bolded more names in publications, and made larger heading for sperm whale analysis in training materials

content/Hardware.qmd

@@ -7,7 +7,7 @@ subtitle: "SEFSC Passive Acoustic Ecology Program"
 
 While ship surveys allow us to study marine mammals over a broad area during a period of a few months, sometimes we want to study their occurrence at specific locations over extended periods of time. We do this by deploying autonomous moored recording instruments that remain on the seafloor for predetermined time periods. 
 
-Autonomous recorders include [HARPs (High-frequency Acoustic Recording Packages)](https://www.cetus.ucsd.edu/technologies_HARP.html), [MARUs (Marine Acoustic Recording Units)](https://www.birds.cornell.edu/ccb/rockhopper-unit/), and [SoundTrapsTM](https://www.oceaninstruments.co.nz/product/soundtrap-st600-std-long-term-recorder/). They are deployed in areas of interest and are capable of recording sounds for up to 18 months at a time. The amount of time that an instrument can record over depends on numerous factors, including the sampling frequency and duty cycle, and how much data storage and battery capacity the instrument has. When it is time to change the battery and data storage disks, we head out to sea to recover the instruments and collect the data recordings. Then we redeploy them to continue the autonomous sampling. 
+Autonomous recorders include [HARPs (High-frequency Acoustic Recording Packages)](https://www.cetus.ucsd.edu/docs/publications/WigginsUT07.pdf), [MARUs (Marine Acoustic Recording Units)](https://www.birds.cornell.edu/ccb/rockhopper-unit/), and [SoundTrapsTM](https://www.oceaninstruments.co.nz/product/soundtrap-st600-std-long-term-recorder/). They are deployed in areas of interest and are capable of recording sounds for up to 18 months at a time. The amount of time that an instrument can record over depends on numerous factors, including the sampling frequency and duty cycle, and how much data storage and battery capacity the instrument has. When it is time to change the battery and data storage disks, we head out to sea to recover the instruments and collect the data recordings. Then we redeploy them to continue the autonomous sampling. 
 
 These moored recorders provide data on the spatial distribution of whales and dolphins over time. They are useful for understanding seasonal and longer term occurrence and movement patterns. In some cases, they can be used to estimate the density of whales and dolphins and to inform assessments of abundance and population trends.
 
@@ -61,3 +61,6 @@ The tags attach to the whale’s back via suction cups and remain on the whale f
 <!-- You can also link to a separate hardware repository if needed ([SAEL example](https://sael-swfsc.github.io/SAEL-lab-manual/content/Hardware_ADRIFT.html)) -->
 
 <!-- This can be a section with subpages or a qmd -->
+
+
+<!-- old HARP link: (https://www.cetus.ucsd.edu/technologies_HARP.html) -->

content/PublicationsPresentations.qmd

@@ -46,7 +46,7 @@ Rosel, P.E., L. Engleby, L.P. Garrison, J.A. Litz, K.D. Mullin, **M.S. Soldevill
 **Soldevilla, M.S.**, J.A. Hildebrand, K.E. Frasier, L.A. Dias, A. Martinez, K.D. Mullin, P.E. Rosel, and L.P. Garrison. 2017. Spatial distribution and dive behavior of Gulf of Mexico Bryde's whales: potential risk of vessel strikes and fisheries interactions. Endangered Species Research. [doi: 10.3354/esr00834](https://www.int-res.com/articles/suppl/n032p533_supp.pdf)
 <!-- (content/pubs/Soldevilla et al. 2017 ESR.pdf) -->
 
-**Soldevilla, M.S.**, **K. Ternus**, A. Cook, J.A. Hildebrand, K.E. Frasier, A. Martinez, and L.P. Garrison. 2022. Acoustic localization, validation, and characterization of Rice's whale calls. Journal of the Acoustical Society of America. 151(6). [doi:10.1121/10.0011677](https://pubs.aip.org/asa/jasa/article/151/6/4264/2839426/Acoustic-localization-validation-and)
+**Soldevilla, M.S.**, **K. Ternus**, **A. Cook**, J.A. Hildebrand, K.E. Frasier, A. Martinez, and L.P. Garrison. 2022. Acoustic localization, validation, and characterization of Rice's whale calls. Journal of the Acoustical Society of America. 151(6). [doi:10.1121/10.0011677](https://pubs.aip.org/asa/jasa/article/151/6/4264/2839426/Acoustic-localization-validation-and)
 <!-- (content/pubs/Soldevilla et al. 2022.pdf) -->
 
 **Soldevilla, M.S.**, A.N. Rice, C.W. Clark, and L.P. Garrison. 2014. Passive acoustic monitoring on the North Atlantic right whale calving grounds. Endangered Species Research. 25:115-140. [doi: 10.3354/esr00603](https://www.int-res.com/articles/esr2014/25/n025p115.pdf)
@@ -58,7 +58,7 @@ Rosel, P.E., L. Engleby, L.P. Garrison, J.A. Litz, K.D. Mullin, **M.S. Soldevill
 **Soldevilla, M.S.**, **A.J. Debich**, L.P. Garrison, J.A. Hildebrand, and S.M. Wiggins. 2022. Rice's whales in the northwestern Gulf of Mexico: call variation and occurrence beyond the known core habitat. Endangered Species Research. 48: 155-173. [doi: 10.3354/esr01196](https://www.int-res.com/articles/esr2022/48/n048p155.pdf)
 <!-- (content/pubs/Soldevilla et al. 2022 ESR.pdf) -->
 
-**Soldevilla, M.S.**, **A.J. Debich**, I. Perez-Carballo, S. Jarriel, K.E. Frasier, L.P. Garrison, A. Gracia, J.A. Hildebrand, P.E. Rosel, and A. Serrano. 2024. Rice's whale occurrence in the western Gulf of Mexico from passive acoustic recordings. Marine Mammal Science. [doi: 10.1111/mms.13109](https://onlinelibrary.wiley.com/doi/10.1111/mms.13109)
+**Soldevilla, M.S.**, **A.J. Debich**, I. Perez-Carballo, **S. Jarriel**, K.E. Frasier, L.P. Garrison, A. Gracia, J.A. Hildebrand, P.E. Rosel, and A. Serrano. 2024. Rice's whale occurrence in the western Gulf of Mexico from passive acoustic recordings. Marine Mammal Science. [doi: 10.1111/mms.13109](https://onlinelibrary.wiley.com/doi/10.1111/mms.13109)
 <!-- (content/pubs/Soldevilla et al. 2024 MMS.pdf) -->
 
 Solsona-Berga, A., K.E. Frasier, N. Posdaljian, S. Baumann-Pickering, S. Wiggins, **M. Soldevilla**, L. Garrison, and J.A. Hildebrand. 2024. Accounting for sperm whale population demographics in density estimation using passive acoustic monitoring. Marine Ecology Progress Series. 746: 121-140. [doi: 10.3354/meps14693](https://www.int-res.com/articles/meps_oa/m746p121.pdf)

content/TrainingMaterial.qmd

@@ -15,7 +15,7 @@ Rice's Whale Western GoMX Call Examples
 Triton Guide
 
 
-### Sperm whale analysis
+## Sperm whale analysis
 
 [Getting Started - Sperm Whale 3D Tracking Project]()
 <!-- (https://docs.google.com/document/d/1dZIGURhCEpHqiqKNrRGJXT7Fx7sGwGP6/edit?usp=drive_link&ouid=108853723995482129268&rtpof=true&sd=true) -->