Patch - Upper case the column headers for clinical file (#474)

* Upper case the column headers for clinical file * Patch release
Sage-Bionetworks · Jul 17, 2022 · 57d02ca · 57d02ca
1 parent b028c80
commit 57d02ca
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diff --git a/genie/__init__.py b/genie/__init__.py
@@ -7,6 +7,6 @@
 
 # create version in __init__.py
 # https://packaging.python.org/en/latest/guides/single-sourcing-package-version/
-__version__ = "14.0.0"
+__version__ = "14.0.1"
 
 __all__ = ["__version__"]
diff --git a/genie_registry/clinical.py b/genie_registry/clinical.py
@@ -978,8 +978,12 @@ def _validate(self, clinicaldf):
 
     def _get_dataframe(self, filePathList):
         clinicaldf = pd.read_csv(filePathList[0], sep="\t", comment="#")
+        clinicaldf.columns = [col.upper() for col in clinicaldf.columns]
+
         if len(filePathList) > 1:
             other_clinicaldf = pd.read_csv(filePathList[1], sep="\t", comment="#")
+            other_clinicaldf.columns = [col.upper() for col in other_clinicaldf.columns]
+
             try:
                 clinicaldf = clinicaldf.merge(other_clinicaldf, on="PATIENT_ID")
             except Exception: