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Sanduni-P · Sep 13, 2024 · 7ed3331 · 7ed3331
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commit 7ed3331
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Showing 15 changed files with 1,592 additions and 1,123 deletions.
diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-bd23e0d4
+dbf36dc6
diff --git a/about.html b/about.html
diff --git a/index.html b/index.html
diff --git a/search.json b/search.json
diff --git a/site_libs/bootstrap/bootstrap.min.css b/site_libs/bootstrap/bootstrap.min.css
diff --git a/site_libs/quarto-html/quarto-syntax-highlighting.css b/site_libs/quarto-html/quarto-syntax-highlighting.css
diff --git a/site_libs/quarto-html/quarto.js b/site_libs/quarto-html/quarto.js
@@ -94,7 +94,7 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
       if (link.href.indexOf("#") !== -1) {
         const anchor = link.href.split("#")[1];
         const heading = window.document.querySelector(
-          `[data-anchor-id=${anchor}]`
+          `[data-anchor-id="${anchor}"]`
         );
         if (heading) {
           // Add the class
@@ -134,8 +134,10 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
       window.innerHeight + window.pageYOffset >=
       window.document.body.offsetHeight
     ) {
+      // This is the no-scroll case where last section should be the active one
       sectionIndex = 0;
     } else {
+      // This finds the last section visible on screen that should be made active
       sectionIndex = [...sections].reverse().findIndex((section) => {
         if (section) {
           return window.pageYOffset >= section.offsetTop - sectionMargin;
@@ -317,6 +319,7 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
           for (const child of el.children) {
             child.style.opacity = 0;
             child.style.overflow = "hidden";
+            child.style.pointerEvents = "none";
           }
 
           nexttick(() => {
@@ -358,6 +361,7 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
 
               const clone = child.cloneNode(true);
               clone.style.opacity = 1;
+              clone.style.pointerEvents = null;
               clone.style.display = null;
               toggleContents.append(clone);
             }
@@ -432,6 +436,7 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
           for (const child of el.children) {
             child.style.opacity = 1;
             child.style.overflow = null;
+            child.style.pointerEvents = null;
           }
 
           const placeholderEl = window.document.getElementById(
@@ -739,6 +744,7 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
     // Process the collapse state if this is an UL
     if (el.tagName === "UL") {
       if (tocOpenDepth === -1 && depth > 1) {
+        // toc-expand: false
         el.classList.add("collapse");
       } else if (
         depth <= tocOpenDepth ||
@@ -757,10 +763,9 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
   };
 
   // walk the TOC and expand / collapse any items that should be shown
-
   if (tocEl) {
-    walk(tocEl, 0);
     updateActiveLink();
+    walk(tocEl, 0);
   }
 
   // Throttle the scroll event and walk peridiocally
@@ -779,6 +784,10 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
   window.addEventListener(
     "resize",
     throttle(() => {
+      if (tocEl) {
+        updateActiveLink();
+        walk(tocEl, 0);
+      }
       if (!isReaderMode()) {
         hideOverlappedSidebars();
       }

diff --git a/site_libs/quarto-nav/quarto-nav.js b/site_libs/quarto-nav/quarto-nav.js
@@ -5,9 +5,45 @@ const headroomChanged = new CustomEvent("quarto-hrChanged", {
   composed: false,
 });
 
+const announceDismiss = () => {
+  const annEl = window.document.getElementById("quarto-announcement");
+  if (annEl) {
+    annEl.remove();
+
+    const annId = annEl.getAttribute("data-announcement-id");
+    window.localStorage.setItem(`quarto-announce-${annId}`, "true");
+  }
+};
+
+const announceRegister = () => {
+  const annEl = window.document.getElementById("quarto-announcement");
+  if (annEl) {
+    const annId = annEl.getAttribute("data-announcement-id");
+    const isDismissed =
+      window.localStorage.getItem(`quarto-announce-${annId}`) || false;
+    if (isDismissed) {
+      announceDismiss();
+      return;
+    } else {
+      annEl.classList.remove("hidden");
+    }
+
+    const actionEl = annEl.querySelector(".quarto-announcement-action");
+    if (actionEl) {
+      actionEl.addEventListener("click", function (e) {
+        e.preventDefault();
+        // Hide the bar immediately
+        announceDismiss();
+      });
+    }
+  }
+};
+
 window.document.addEventListener("DOMContentLoaded", function () {
   let init = false;
 
+  announceRegister();
+
   // Manage the back to top button, if one is present.
   let lastScrollTop = window.pageYOffset || document.documentElement.scrollTop;
   const scrollDownBuffer = 5;

diff --git a/site_libs/quarto-search/quarto-search.js b/site_libs/quarto-search/quarto-search.js
@@ -1275,7 +1275,11 @@ async function fuseSearch(query, fuse, fuseOptions) {
 
   // If we don't have a subfuse and the query is long enough, go ahead
   // and create a subfuse to use for subsequent queries
-  if (now - then > kFuseMaxWait && subSearchFuse === undefined) {
+  if (
+    now - then > kFuseMaxWait &&
+    subSearchFuse === undefined &&
+    resultsRaw.length < fuseOptions.limit
+  ) {
     subSearchTerm = query;
     subSearchFuse = new window.Fuse([], kFuseIndexOptions);
     resultsRaw.forEach((rr) => {

diff --git a/sitemap.xml b/sitemap.xml
@@ -1,31 +1,31 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
   <url>
-    <loc>https://Sanduni-P.github.io/IntroR/vignettes/2_Reading_tidying_data.html</loc>
-    <lastmod>2024-04-23T09:38:46.797Z</lastmod>
+    <loc>https://Sanduni-P.github.io/IntroR/about.html</loc>
+    <lastmod>2024-09-13T01:41:39.061Z</lastmod>
   </url>
   <url>
-    <loc>https://Sanduni-P.github.io/IntroR/vignettes/1_Introduction.html</loc>
-    <lastmod>2024-04-23T09:38:46.797Z</lastmod>
+    <loc>https://Sanduni-P.github.io/IntroR/vignettes/3_Data_Manipulation.html</loc>
+    <lastmod>2024-09-13T01:41:39.061Z</lastmod>
   </url>
   <url>
     <loc>https://Sanduni-P.github.io/IntroR/vignettes/5_Exploring_Metabric.html</loc>
-    <lastmod>2024-04-23T09:38:46.797Z</lastmod>
+    <lastmod>2024-09-13T01:41:39.061Z</lastmod>
   </url>
   <url>
-    <loc>https://Sanduni-P.github.io/IntroR/about.html</loc>
-    <lastmod>2024-04-23T09:38:46.797Z</lastmod>
+    <loc>https://Sanduni-P.github.io/IntroR/vignettes/1_Introduction.html</loc>
+    <lastmod>2024-09-13T01:41:39.061Z</lastmod>
   </url>
   <url>
-    <loc>https://Sanduni-P.github.io/IntroR/index.html</loc>
-    <lastmod>2024-04-23T09:38:46.797Z</lastmod>
+    <loc>https://Sanduni-P.github.io/IntroR/vignettes/4_Visualization.html</loc>
+    <lastmod>2024-09-13T01:41:39.061Z</lastmod>
   </url>
   <url>
-    <loc>https://Sanduni-P.github.io/IntroR/vignettes/4_Visualization.html</loc>
-    <lastmod>2024-04-23T09:38:46.797Z</lastmod>
+    <loc>https://Sanduni-P.github.io/IntroR/vignettes/2_Reading_tidying_data.html</loc>
+    <lastmod>2024-09-13T01:41:39.061Z</lastmod>
   </url>
   <url>
-    <loc>https://Sanduni-P.github.io/IntroR/vignettes/3_Data_Manipulation.html</loc>
-    <lastmod>2024-04-23T09:38:46.797Z</lastmod>
+    <loc>https://Sanduni-P.github.io/IntroR/index.html</loc>
+    <lastmod>2024-09-13T01:41:39.061Z</lastmod>
   </url>
 </urlset>
diff --git a/vignettes/1_Introduction.html b/vignettes/1_Introduction.html
diff --git a/vignettes/2_Reading_tidying_data.html b/vignettes/2_Reading_tidying_data.html
diff --git a/vignettes/3_Data_Manipulation.html b/vignettes/3_Data_Manipulation.html
diff --git a/vignettes/4_Visualization.html b/vignettes/4_Visualization.html
diff --git a/vignettes/5_Exploring_Metabric.html b/vignettes/5_Exploring_Metabric.html