Add pandoc patch. #36
Workflow file for this run
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| name: Build | |
| on: [push] | |
| permissions: | |
| actions: read | |
| contents: read | |
| jobs: | |
| buildPaper: | |
| environment: build | |
| runs-on: ubuntu-latest | |
| name: Build Paper | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Update apt | |
| run: sudo apt-get update | |
| - name: Install zip | |
| run: sudo apt-get install zip | |
| - name: Install wget | |
| run: sudo apt-get install wget | |
| - name: Download pipeline summary outputs | |
| run: wget --user $user --password $pass https://ag-adaptation-study.pub/archive/outputs.zip | |
| env: | |
| user: ${{ secrets.HttpUser }} | |
| pass: ${{ secrets.HttpPass }} | |
| - name: Unzip downloaded summary data | |
| run: unzip outputs.zip | |
| - name: Move downloaded summary data | |
| run: mv outputs paper/outputs | |
| - name: Download pipeline detailed outputs | |
| run: wget --user $user --password $pass https://ag-adaptation-study.pub/archive/data.zip | |
| env: | |
| user: ${{ secrets.HttpUser }} | |
| pass: ${{ secrets.HttpPass }} | |
| - name: Unzip downloaded detailed data | |
| run: unzip data.zip | |
| - name: Move downloaded detailed data | |
| run: mv data paper/viz/data | |
| - name: Make font build dir | |
| run: mkdir font_build | |
| - name: Download font | |
| run: cd font_build; wget https://github.com/uswds/public-sans/releases/download/v2.001/public-sans-v2.001.zip | |
| - name: Unzip font | |
| run: cd font_build; unzip public-sans-v2.001 | |
| - name: Make font destination | |
| run: mkdir paper/viz/font | |
| - name: Move font | |
| run: mv font_build/fonts/otf/PublicSans-Regular.otf paper/viz/font/PublicSans-Regular.otf | |
| - name: Install Python deps | |
| run: cd paper; pip install -r requirements.txt | |
| - name: Install Pandoc deps | |
| run: sudo apt-get install texlive-extra-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-bibtex-extra biber | |
| - name: Download Pandoc | |
| run: wget https://github.com/jgm/pandoc/releases/download/3.1.9/pandoc-3.1.9-1-amd64.deb | |
| - name: Install Pandoc | |
| run: sudo dpkg -i pandoc-3.1.9-1-amd64.deb | |
| - name: Prep file structure | |
| run: mkdir paper/img | |
| - name: Get static images | |
| run: cd paper/img; wget --user $user --password $pass https://ag-adaptation-study.pub/archive/pipeline.png | |
| env: | |
| user: ${{ secrets.HttpUser }} | |
| pass: ${{ secrets.HttpPass }} | |
| - name: Patch Pandoc deps | |
| run: python -m pip install --force-reinstall git+https://github.com/tomduck/pandoc-xnos@284474574f51888be75603e7d1df667a0890504d#egg=pandoc-xnos | |
| - name: Build paper | |
| run: cd paper; bash render.sh | |
| - name: Move export | |
| run: mv paper/arxiv.zip arxiv.zip | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: arxiv | |
| path: arxiv.zip | |
| if-no-files-found: error | |
| buildDeploy: | |
| environment: build | |
| runs-on: ubuntu-latest | |
| name: Build Deploy | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Build deploy | |
| run: bash prepare_viz_deploy.sh | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: deploy | |
| path: deploy.zip | |
| if-no-files-found: error | |
| - name: Check build | |
| run: python paper/viz/script/check_deploy.py deploy | |
| deploy: | |
| environment: deploy | |
| name: Deploy | |
| runs-on: ubuntu-latest | |
| needs: [buildDeploy] | |
| if: github.ref == 'refs/heads/main' | |
| steps: | |
| - name: Download artifact | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: deploy | |
| - name: Unzip | |
| run: unzip deploy.zip | |
| - name: Deploy | |
| uses: Creepios/sftp-action@v1.0.3 | |
| with: | |
| host: ${{ secrets.SFTPHOST }} | |
| port: 22 | |
| username: ${{ secrets.SFTPUSER }} | |
| password: ${{ secrets.SFTPPASSWORD }} | |
| localPath: './deploy' | |
| remotePath: './ag-adaptation-study.pub' |