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Version 3.3.4: switched to cmake

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@TimoLassmann TimoLassmann released this 28 Oct 05:27
· 28 commits to main since this release
v3.3.4
dfb5d86

Switched to cmake
Additional changes:

  1. added a Kalign library to make it easier to use Kalign from another projects
  2. added a block version of Gene Myers bit parallel string matching code (described here: Myers, Gene. "A fast bit-vector algorithm for approximate string matching based on dynamic programming." Journal of the ACM (JACM) 46.3 (1999): 395-415). This means Kalign will now run equivalently on processors with and without AVX2 instructions (e.g. apple M1 / M2 and ARM chips).
  3. alignment types giving users more control over alignment parameters.
  4. multi-threading
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