RNASeq-NF v1.1

• Add support for bam file input
• Start from, and only run, specific steps (when proper conditions are met/input is set)
• Make use of general config file for main settings
• Add TPM normalized read counting
• Various bug fixes

RNASeq-NF v1.0.4

• Moved Sambamba Markdup to GATK variant calling sub-workflow
• Refactored config files

RNASeq-NF v1.0.3

• Custom MultiQC config
• Replaced RSeQC bam_stat with Samtools flagstat

RNASeq-NF v1.0.2

• Fixed RSeQC TIN plot not showing in custom QC report

RNASeq-NF (v1.0.1)

• Added support for email notifications with attached MultiQC report.
• Moved resource requirements from main workflow to corresponding sub-workflows.
• Added custom run name parameter.
• Updated help menu.

RNASeq-NF (v1.0.0)

The first release of RNASeq-NF, including custom QC module.

v1.0.0rc3

• Rewrote multi-lane Fastq handling
• DESeq2 normalization for featureCounts
• small fixes & refactoring

RNASeq-NF (pre-release)

• small fixes in config files
• module re-structuring

RNASeq-NF (pre-release)

First pre-release of the RNASeq-NF pipeline.