Add indications_exome_equivalent

UMCUGenetics · Feb 13, 2024 · 0c5ee77 · 0c5ee77
1 parent ee4b19e
commit 0c5ee77
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diff --git a/clarity_epp/upload/samples.py b/clarity_epp/upload/samples.py
@@ -166,6 +166,10 @@ def from_helix(lims, email_settings, input_file):
         if udf_data['Dx Onderzoeksindicatie'] == 'DSD00' and udf_data['Dx Familie status'] == 'Kind':
             udf_data['Dx Geslacht'] = 'Onbekend'
 
+        # Set 'Dx Exoomequivalent' for specific indications
+        if udf_data['Dx Onderzoeksindicatie'] in config.indications_exome_equivalent:
+            udf_data['Dx Exoomequivalent'] = config.indications_exome_equivalent[udf_data['Dx Onderzoeksindicatie']]
+
         # Check 'Dx Familienummer' and correct
         if '/' in udf_data['Dx Familienummer']:
             udf_data['Dx Import warning'] = ';'.join([

diff --git a/config.py b/config.py
@@ -30,6 +30,9 @@
     stoftestcode_mip: '1651',  # DEV Dx smMIP v1.2
 }
 
+# Update exome equivalent for certain indications
+indications_exome_equivalent = {'UBA1': 5, 'PID09': 5}
+
 # Export meetw protocol steps WES
 meetw_zui_wes_processes = [
     'Dx Sample registratie zuivering v1.1',