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fixed function name
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erinyoung committed Jan 16, 2025
1 parent dac65b3 commit 9f00e5c
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions subworkflows/local/test.nf
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
include { DOWNLOAD_SRA } from '../../modules/local/local'
include { ENA_DOWNLOAD as DOWNLOAD_FASTQ } from '../../modules/local/ena'
include { DATASETS_DOWNLOAD as DOWNLOAD_GENOME } from '../../modules/local/datasets'

workflow TEST {
Expand All @@ -10,10 +10,10 @@ workflow TEST {
ch_versions = Channel.empty()

if ( ! params.sra_accessions.isEmpty() || ! params.genome_accessions.isEmpty() ) {
DOWNLOAD_SRA(ch_sra_accessions)
//ch_versions = ch_versions.mix(DOWNLOAD_SRA.out.versions.first())
DOWNLOAD_FASTQ(ch_sra_accessions)
ch_versions = ch_versions.mix(DOWNLOAD_FASTQ.out.versions.first())

DOWNLOAD_SRA.out.fastq
DOWNLOAD_FASTQ.out.fastq
.map { it ->
def meta = [id:it[0]]
tuple( meta, [file(it[1][0]), file(it[1][1])])
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