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gammaModel

This repository contains functions and scripts that were used in developing the OV model and generate the results and figures from: Hermes, Petridou, Kay and Winawer, 2019. If you use this code as a part of any publications, please please cite this work: Hermes D, Petridou N, Kay K, Winawer J. 2019 An image-computable model for the stimulus selectivity of gamma oscillations. bioRxiv doi: https://doi.org/10.1101/583567

Code (c) Dora Hermes, Kendrick Kay and Jonathan Winawer

Please direct any comments about the code via the issues page associated with this GitHub repository, or via email to dorahermes@gmail.com

This code was made available with the support of the Netherlands Organization for Scientific Research www.nwo.nl under award number 016.VENI.178.048 to Dora Hermes and the National Institute Of Mental Health of the National Institutes of Health under Award Number R01MH111417 to Natalia Petridou and Jonathan Winawer. The ECoG data collection was facilitated by the Stanford Human Intracranial Cognitive Electrophysiology Program (SHICEP) and the Epilepsy Team at the UMC Utrecht Brain Center.

Dependencies

Make sure that the following toolboxes are downloaded and in the path: https://github.com/kendrickkay/knkutils https://github.com/fieldtrip/fieldtrip https://github.com/dorahermes/ecogBasicCode http://chronux.org/

Matlab toolboxes: curve_fitting_toolbox optimization_toolbox signal_toolbox statistics_toolbox

Functions to preprocess and analyze data and make figures can be found in:

/make_figures/

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model to predict ECoG gamma oscillations

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