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@Xomics

The Netherlands X-omics Initiative

The Netherlands X-omics Initiative aims to establish a X-omics research infrastructure across the Netherlands
README.md

Welcome

Visit our website at https://x-omics.nl/.

We here share repositories for tools developed in the data analysis, integration & stewardship pillar of the Netherlands X-omics Initiative.

Popular repositories Loading

  1. FAIRDataCube FAIRDataCube Public

    Design and implementation of FAIR Data Cube

    Jupyter Notebook 9 5

  2. TWOCdemonstrator TWOCdemonstrator Public

    X-omics TWOC demonstrator

    Python 4 1

  3. ISA-ACTION-Template ISA-ACTION-Template Public

    Template for the creation of ISA-Tab files for the ACTION demonstrator project (with fake IDs)

    Jupyter Notebook 2

  4. ACTIONdemonstrator_workflow ACTIONdemonstrator_workflow Public

    X-omics ACTION demonstrator multi-omics analysis workflow

    Jupyter Notebook 2

  5. MetabolomicsMeta-data MetabolomicsMeta-data Public

    1

  6. Isatools_environment Isatools_environment Public

    Computational environment to work with Isatools

    Jupyter Notebook 1 1

Repositories

Showing 10 of 22 repositories
  • FAIRDS Public

    FAIRDataStation metadata and templates for x-omics projects

    Xomics/FAIRDS’s past year of commit activity
    0 0 0 0 Updated Jan 27, 2025
  • Docker_containers Public

    Collection of Docker containers that are used in X-omics workflows

    Xomics/Docker_containers’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Jan 8, 2025
  • FAIRDataCube Public

    Design and implementation of FAIR Data Cube

    Xomics/FAIRDataCube’s past year of commit activity
    Jupyter Notebook 9 MIT 5 0 4 Updated Dec 9, 2024
  • TWOCdemonstrator Public

    X-omics TWOC demonstrator

    Xomics/TWOCdemonstrator’s past year of commit activity
    Python 4 MIT 1 2 0 Updated Oct 18, 2024
  • ACTIONdemonstrator_workflow Public

    X-omics ACTION demonstrator multi-omics analysis workflow

    Xomics/ACTIONdemonstrator_workflow’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Nov 24, 2023
  • ISA-ACTION-Template Public

    Template for the creation of ISA-Tab files for the ACTION demonstrator project (with fake IDs)

    Xomics/ISA-ACTION-Template’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Oct 25, 2023
  • r-base-phenotypes Public

    Docker container behavioral data pre-processing in R

    Xomics/r-base-phenotypes’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Oct 24, 2023
  • r-base-epigenomics-pre Public

    Docker container epigenomics data pre-processing in R

    Xomics/r-base-epigenomics-pre’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Oct 24, 2023
  • mofa2 Public

    Docker container for running Multi-Omics Factor Analysis (MOFA) in R

    Xomics/mofa2’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Oct 24, 2023
  • miniconda-snf Public

    Docker container for running Similarity Network Fusion (SNF) in Python

    Xomics/miniconda-snf’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Oct 24, 2023
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