changelog and fixes

aeon-toolkit · Jul 10, 2024 · 0d9e82c · 0d9e82c
1 parent 6622178
commit 0d9e82c
Show file tree

Hide file tree

Showing 4 changed files with 54 additions and 45 deletions.
diff --git a/.github/workflows/pr_precommit.yml b/.github/workflows/pr_precommit.yml
@@ -17,19 +17,8 @@ jobs:
     runs-on: ubuntu-20.04
 
     steps:
-      - name: Create app token
-        uses: actions/create-github-app-token@v1
-        id: app-token
-        with:
-          app-id: ${{ vars.PR_APP_ID }}
-          private-key: ${{ secrets.PR_APP_KEY }}
-
       - name: Checkout
         uses: actions/checkout@v4
-        with:
-          repository: ${{ github.event.pull_request.head.repo.full_name }}
-          ref: ${{ github.head_ref }}
-          token: ${{ steps.app-token.outputs.token }}
 
       - name: Setup Python 3.10
         uses: actions/setup-python@v5
@@ -43,6 +32,7 @@ jobs:
       - name: List changed files
         run: echo '${{ steps.changed-files.outputs.all_changed_files }}'
 
+      # only check the full repository if PR and correctly labelled
       - if: ${{ github.event_name == 'pull_request_target' && contains(github.event.pull_request.labels.*.name, 'full pre-commit') }}
         name: Full pre-commit
         uses: pre-commit/action@v3.0.1
@@ -54,6 +44,23 @@ jobs:
         with:
           extra_args: --files ${{ steps.changed-files.outputs.all_changed_files }}
 
+      # push fixes if pre-commit fails and PR is eligible
+      - if: ${{ failure() && github.event_name == 'pull_request_target' && !github.event.pull_request.draft && !contains(github.event.pull_request.labels.*.name, 'stop pre-commit fixes') }}
+        name: Create app token
+        uses: actions/create-github-app-token@v1
+        id: app-token
+        with:
+          app-id: ${{ vars.PR_APP_ID }}
+          private-key: ${{ secrets.PR_APP_KEY }}
+
+      - if: ${{ failure() && github.event_name == 'pull_request_target' && !github.event.pull_request.draft && !contains(github.event.pull_request.labels.*.name, 'stop pre-commit fixes') }}
+        name: Checkout
+        uses: actions/checkout@v4
+        with:
+          repository: ${{ github.event.pull_request.head.repo.full_name }}
+          ref: ${{ github.head_ref }}
+          token: ${{ steps.app-token.outputs.token }}
+
       - if: ${{ failure() && github.event_name == 'pull_request_target' && !github.event.pull_request.draft && !contains(github.event.pull_request.labels.*.name, 'stop pre-commit fixes') }}
         name: Push pre-commit fixes
         uses: stefanzweifel/git-auto-commit-action@v5

diff --git a/build_tools/pr_labeler.py b/build_tools/pr_labeler.py
@@ -31,17 +31,17 @@
 title = pr.title
 
 title_regex_to_labels = [
-    (r"\bENH\b", "enhancement"),
-    (r"\bMNT\b", "maintenance"),
-    (r"\bBUG\b", "bug"),
-    (r"\bDOC\b", "documentation"),
-    (r"\bREF\b", "refactor"),
-    (r"\bDEP\b", "deprecation"),
-    (r"\bGOV\b", "governance"),
+    (r"\benh\b", "enhancement"),
+    (r"\bmnt\b", "maintenance"),
+    (r"\bbug\b", "bug"),
+    (r"\bdoc\b", "documentation"),
+    (r"\bref\b", "refactor"),
+    (r"\bdep\b", "deprecation"),
+    (r"\bgov\b", "governance"),
 ]
 
 title_labels = [
-    label for regex, label in title_regex_to_labels if re.search(regex, title)
+    label for regex, label in title_regex_to_labels if re.search(regex, title.lower())
 ]
 title_labels_to_add = list(set(title_labels) - set(labels))
 

diff --git a/docs/changelog.md b/docs/changelog.md
@@ -1,15 +1,15 @@
 # Changelog
 
 All notable changes to this project will be documented in this file. The format is
-based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and we adhere
+based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and we adhere
 to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). The source code for
 all [releases](https://github.com/aeon-toolkit/aeon/releases) is available on GitHub.
 
-To stay up-to-date with aeon releases, subscribe to aeon
+To stay up to date with aeon releases, subscribe to aeon
 [here](https://libraries.io/pypi/aeon) or follow us on
 [Twitter](https://twitter.com/aeon_toolbox).
 
-- [Version 0.109.0](changelogs/v0.10.md)
+- [Version 0.10.0](changelogs/v0.10.md)
 - [Version 0.9.0](changelogs/v0.9.md)
 - [Version 0.8.0](changelogs/v0.8.md)
 - [Version 0.7.0](changelogs/v0.7.md)

diff --git a/docs/changelogs/v0.10.md b/docs/changelogs/v0.10.md
@@ -8,10 +8,6 @@ July 2024
 
 ## Anomaly Detection
 
-### Bug Fixes
-
-- [BUG] Fix broken import causing CI to fail ({pr}`1717`) {user}`MatthewMiddlehurst`
-
 ### Documentation
 
 - [DOC] Improve anomaly detector documentation ({pr}`1647`) {user}`CodeLionX`
@@ -32,7 +28,6 @@ July 2024
 ### Bug Fixes
 
 - [BUG] Fixing wrong output activation in MLPClassifier ({pr}`1597`) {user}`hadifawaz1999`
-- [BUG] removed njit test exclusions ({pr}`1598`) {user}`TonyBagnall`
 - [ENH,BUG] LearnedShapelets interfaced functions ({pr}`1687`) {user}`TonyBagnall`
 - [BUG] Adding modelcheckpoint callback by default to deep learners when user chooses their own callbacks list ({pr}`1763`) {user}`hadifawaz1999`
 - [BUG] Store n_timepoints and n_channels in fit to check in transform ({pr}`1758`) {user}`TonyBagnall`
@@ -41,6 +36,11 @@ July 2024
 
 - [DEP] Rocket,RotationForest and FreshPrince deprecations (plus a bug fix) ({pr}`1648`) {user}`TonyBagnall`
 
+### Documentation
+
+- [DOC] remove ProximityTree from distance classifier notebook results display ({pr}`1745`) {user}`TonyBagnall`
+- [DOC] typo in convolutions notebook ({pr}`1769`) {user}`TonyBagnall`
+
 ### Enhancements
 
 - [ENH,BUG] LearnedShapelets interfaced functions ({pr}`1687`) {user}`TonyBagnall`
@@ -66,21 +66,14 @@ July 2024
 
 - [ENH] Add DummyClusterer ({pr}`1567`) {user}`aadya940`
 - [ENH] Simple feature based clusterers ({pr}`1548`) {user}`MatthewMiddlehurst`
-
-### Maintenance
-
-- [MNT] removed unused attribute from k-means ({pr}`1727`) {user}`chrisholder`
+- [ENH] removed unused attribute from k-means ({pr}`1727`) {user}`chrisholder`
 
 ## Datasets
 
 ### Bug Fixes
 
 - [BUG] Fix TSAD data loading tests and example notebooks ({pr}`1695`) {user}`CodeLionX`
 
-### Documentation
-
-- [DOC] added reference to docstring of MERLIN anomaly detection ({pr}`1707`) {user}`adm-unl`
-
 ### Enhancements
 
 - [ENH] Loader for TimeEval (anomaly detection) datasets ({pr}`1588`) {user}`CodeLionX`
@@ -103,6 +96,9 @@ July 2024
 
 ## Forecasting
 
+WARNING: The current forecasting framework is being removed in v1.0.0. To be replaced
+with a new framework. See the index page for more information.
+
 ### Bug Fixes
 
 - [BUG] remove none argument for coerce to period ({pr}`1514`) {user}`TonyBagnall`
@@ -129,6 +125,10 @@ July 2024
 
 - [DEP] Rocket,RotationForest and FreshPrince deprecations (plus a bug fix) ({pr}`1648`) {user}`TonyBagnall`
 
+### Documentation
+
+- [DOC] Added All Regressors (2nd Attempt) ({pr}`1663`) {user}`Moonzyyy`
+
 ### Enhancements
 
 - [ENH] Tidy, deprecation actions and testing for sklearn estimators ({pr}`1701`) {user}`MatthewMiddlehurst`
@@ -145,12 +145,16 @@ July 2024
 
 ## Similarity Search
 
-### Maintenance
+### Enhancements
 
-- [MNT] Update similarity search with new base classes : Query Search ({pr}`1508`) {user}`baraline`
+- [ENH] Update similarity search with new base classes : Query Search ({pr}`1508`) {user}`baraline`
 
 ## Transformations
 
+WARNING: The current `BaseTransformer` framework is being removed in v1.0.0. To be
+replaced with individual frameworks for collection and series transformations. See the
+index page for more information.
+
 ### Bug Fixes
 
 - [BUG] Convert rockets to only use 32 bit floats internally ({pr}`1612`) {user}`TonyBagnall`
@@ -185,6 +189,7 @@ July 2024
 ### Documentation
 
 - [DOC] Add SlidingWindowSegmenter to API reference ({pr}`1600`) {user}`CodeLionX`
+- [Doc] Images for "Transformations"  ({pr}`1736`) {user}`Abhash297`
 - [DOC] Improve BaseCollectionTransformer docstrings ({pr}`1733`) {user}`TonyBagnall`
 
 ### Enhancements
@@ -227,6 +232,7 @@ July 2024
 ### Refactored
 
 - [ENH] Improve and refactor collection test data generation utilities ({pr}`1564`) {user}`MatthewMiddlehurst`
+- [REF] Refactor `testing.utils.data_gen` into `testing.data_generation` ({pr}`1589`) {user}`MatthewMiddlehurst`
 
 ## Visualisations
 
@@ -236,6 +242,10 @@ July 2024
 
 ## Other
 
+### Bug Fixes
+
+- [BUG] Fix broken import causing CI to fail ({pr}`1717`) {user}`MatthewMiddlehurst`
+
 ### Deprecation
 
 - [DEP] Remove probablistic class based metrics ({pr}`1630`) {user}`TonyBagnall`
@@ -245,13 +255,10 @@ July 2024
 
 ### Documentation
 
-- [DOC] Added All Regressors (2nd Attempt) ({pr}`1663`) {user}`Moonzyyy`
 - [DOC] Fixed a typo in mentoring.md ({pr}`1700`) {user}`futuer-szd`
 - [MNT,DOC] Remove `extension_templates` ({pr}`1657`) {user}`MatthewMiddlehurst`
 - [DOCS] Add any papers ({pr}`1526`) {user}`TonyBagnall`
-- [DOC] remove ProximityTree from distance classifier notebook results display ({pr}`1745`) {user}`TonyBagnall`
 - [DOC,MNT] Documentation updates and deprecation warning for `v1.0.0` ({pr}`1743`) {user}`MatthewMiddlehurst`
-- [DOC] typo in convolutions notebook ({pr}`1769`) {user}`TonyBagnall`
 
 ### Maintenance
 
@@ -267,14 +274,9 @@ July 2024
 - [MNT] Removing `tensorflow_addons` dependency ({pr}`1421`) {user}`MatthewMiddlehurst`
 - [MNT] Fix certain workflow actions for forks and add button for resetting CI ({pr}`1764`) {user}`MatthewMiddlehurst`
 
-### Refactored
-
-- [REF] Refactor `testing.utils.data_gen` into `testing.data_generation` ({pr}`1589`) {user}`MatthewMiddlehurst`
-
 ### Other
 
 - [DEP] Simple removals for deprecation list for 0.10 ({pr}`1644`) {user}`TonyBagnall`
-- [Doc] Images for "Transformations"  ({pr}`1736`) {user}`Abhash297`
 - [MNT] Raise tensorflow bound to >2.13 ({pr}`1765`) {user}`TonyBagnall`
 
 ## Contributors