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[MNT] Replace Intel macOS runners with m1 macOS runners in CI #1585

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2 changes: 1 addition & 1 deletion .github/workflows/periodic_tests.yml
Original file line number Diff line number Diff line change
Expand Up @@ -129,7 +129,7 @@ jobs:
strategy:
fail-fast: false
matrix:
os: [ ubuntu-20.04, macOS-13, windows-2022 ]
os: [ ubuntu-20.04, macOS-14, windows-2022 ]
python-version: [ "3.9", "3.10", "3.11", "3.12" ]

steps:
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/pr_pytest.yml
Original file line number Diff line number Diff line change
Expand Up @@ -55,7 +55,7 @@ jobs:
strategy:
fail-fast: false
matrix:
os: [ ubuntu-20.04, macOS-13, windows-2022 ]
os: [ ubuntu-20.04, macOS-14, windows-2022 ]
python-version: [ "3.9", "3.10", "3.11", "3.12" ]
# skip python versions unless the PR has the 'full pytest actions' label
pr-testing:
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/release.yml
Original file line number Diff line number Diff line change
Expand Up @@ -51,7 +51,7 @@ jobs:
strategy:
fail-fast: false
matrix:
os: [ ubuntu-20.04, macOS-13, windows-2022 ]
os: [ ubuntu-20.04, macOS-14, windows-2022 ]
python-version: [ "3.9", "3.10", "3.11", "3.12" ]

steps:
Expand Down
14 changes: 12 additions & 2 deletions aeon/classification/dictionary_based/tests/test_redcomets.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,9 @@
"""REDCOMETS test code."""

__maintainer__ = []

from sys import platform

import numpy as np
import pytest

Expand Down Expand Up @@ -30,7 +34,10 @@ def test_variant(v, expected_result):
score = redcomets.score(X_test, y_test)

assert isinstance(score, float)
np.testing.assert_almost_equal(score, expected_result, decimal=4)

# We cannot guarantee same results on ARM macOS
if platform != "darwin":
np.testing.assert_almost_equal(score, expected_result, decimal=4)

test_variant(1, 0.7272)
test_variant(2, 0.6818)
Expand Down Expand Up @@ -59,7 +66,10 @@ def test_variant(v, expected_result):
score = redcomets.score(X_test, y_test)

assert isinstance(score, float)
np.testing.assert_almost_equal(score, expected_result, decimal=4)

# We cannot guarantee same results on ARM macOS
if platform != "darwin":
np.testing.assert_almost_equal(score, expected_result, decimal=4)

test_variant(1, 0.95)
test_variant(2, 0.975)
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,8 @@

__maintainer__ = []

from sys import platform

import numpy as np
from sklearn.utils._testing import set_random_state

Expand Down Expand Up @@ -78,6 +80,10 @@ def test_early_classifier_against_expected_results(self, estimator_class):
# we only use the first estimator instance for testing
classname = estimator_class.__name__

# We cannot guarantee same results on ARM macOS
if platform == "darwin":
return None

for data_name, data_dict, data_loader, data_seed in [
["UnitTest", unit_test_proba, load_unit_test, 0],
["BasicMotions", basic_motions_proba, load_basic_motions, 4],
Expand Down
29 changes: 19 additions & 10 deletions aeon/classification/early_classification/tests/test_teaser.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,7 @@
"""TEASER test code."""

from sys import platform

import numpy as np
import pytest
from numpy import testing
Expand All @@ -26,9 +28,12 @@ def test_teaser_with_different_decision_maker():
teaser.fit(X_train[indices], y_train[indices])

full_probas, _ = teaser.predict_proba(X_test)
testing.assert_array_almost_equal(
full_probas, teaser_if_unit_test_probas, decimal=2
)

# We cannot guarantee same results on ARM macOS
if platform != "darwin":
testing.assert_array_almost_equal(
full_probas, teaser_if_unit_test_probas, decimal=2
)

# make sure update ends up with the same probas
teaser.reset_state_info()
Expand All @@ -46,9 +51,11 @@ def test_teaser_with_different_decision_maker():
if len(X_test) == 0:
break

testing.assert_array_almost_equal(
final_probas, teaser_if_unit_test_probas, decimal=2
)
# We cannot guarantee same results on ARM macOS
if platform != "darwin":
testing.assert_array_almost_equal(
final_probas, teaser_if_unit_test_probas, decimal=2
)


def test_teaser_near_classification_points():
Expand Down Expand Up @@ -92,11 +99,13 @@ def test_teaser_default():

_, acc, earl = teaser.score(X_test[indices], y_test)

testing.assert_allclose(acc, 0.6, rtol=0.01)
testing.assert_allclose(earl, 0.766, rtol=0.01)
# We cannot guarantee same results on ARM macOS
if platform != "darwin":
testing.assert_allclose(acc, 0.6, rtol=0.01)
testing.assert_allclose(earl, 0.766, rtol=0.01)

testing.assert_allclose(teaser._train_accuracy, 0.9, rtol=0.01)
testing.assert_allclose(teaser._train_earliness, 0.733, rtol=0.01)
testing.assert_allclose(teaser._train_accuracy, 0.9, rtol=0.01)
testing.assert_allclose(teaser._train_earliness, 0.733, rtol=0.01)


def load_unit_data():
Expand Down
5 changes: 5 additions & 0 deletions aeon/classification/tests/test_all_classifiers.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@
__maintainer__ = []

import inspect
from sys import platform

import numpy as np
from sklearn.utils._testing import set_random_state
Expand Down Expand Up @@ -72,6 +73,10 @@ def test_classifier_against_expected_results(self, estimator_class):
# we only use the first estimator instance for testing
classname = estimator_class.__name__

# We cannot guarantee same results on ARM macOS
if platform == "darwin":
return None

# the test currently fails when numba is disabled. See issue #622
import os

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,8 @@

__maintainer__ = []

from sys import platform

import numpy as np
import pytest
from sklearn.metrics import mean_squared_error
Expand Down Expand Up @@ -82,6 +84,9 @@ def test_weights_for_airline_normal_hedge():

def test_weights_for_airline_nnls():
"""Test weights."""
if platform == "darwin":
pytest.skip("Skipping test on macOS due to error.")

y = load_airline()
y_train, y_test = temporal_train_test_split(y)

Expand Down
5 changes: 5 additions & 0 deletions aeon/regression/tests/test_all_regressors.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@

__maintainer__ = []

from sys import platform

import numpy as np
from sklearn.utils._testing import set_random_state
Expand Down Expand Up @@ -44,6 +45,10 @@ def test_regressor_against_expected_results(self, estimator_class):
# we only use the first estimator instance for testing
classname = estimator_class.__name__

# We cannot guarantee same results on ARM macOS
if platform == "darwin":
return None

for data_name, data_dict, data_loader, data_seed in [
["Covid3Month", covid_3month_preds, load_covid_3month, 0],
["CardanoSentiment", cardano_sentiment_preds, load_cardano_sentiment, 0],
Expand Down
17 changes: 0 additions & 17 deletions docs/api_reference/utils.rst
Original file line number Diff line number Diff line change
Expand Up @@ -49,23 +49,6 @@ Estimator Search and Retrieval, Estimator Tags
check_tag_is_valid


Estimator Validity Checking
---------------------------

:mod:`aeon.testing.estimator_checks`

.. automodule:: aeon.testing.estimator_checks
:no-members:
:no-inherited-members:

.. currentmodule:: aeon.testing.estimator_checks

.. autosummary::
:toctree: auto_generated/
:template: function.rst

check_estimator

Data Validation Tools
---------------------

Expand Down
40 changes: 18 additions & 22 deletions docs/installation.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# Installation

`aeon` currently supports Python versions 3.8, 3.9, 3.10, 3.11 and 3.12. Prior to these
`aeon` currently supports Python versions 3.9, 3.10, 3.11 and 3.12. Prior to these
instructions, please ensure you have a compatible version of Python installed
(i.e. from https://www.python.org).

Expand All @@ -19,6 +19,11 @@ latest release.
develop the `aeon` codebase and for most other contributions to the project. [Our
developer installation guide is available here](../developer_guide/dev_installation).

```{note}
While we try to keep output similar between OS and Python version. We cannot
guarentee the estimators will output the same results for macOS ARM processors.
```

## Optional Dependencies

All installation options include the core dependencies required to run the framework
Expand Down Expand Up @@ -61,9 +66,8 @@ pip install -U aeon[all_extras]
```

```{warning}
Some of the dependencies included in `all_extras` do not work on Mac ARM-based
processors, such as M1, M2, M1Pro, M1Max or M1Ultra. This may cause an error during
installation. Mode details can be found in the troubleshooting section below.
Some dependencies included in `all_extras` may have installation issues for macOS
with ARM processors. More details can be found in the troubleshooting section below.
```

After installation, you can verify that `aeon` has been installed correctly by
Expand Down Expand Up @@ -192,24 +196,16 @@ virtual environment as a new kernel for your notebook.

If you are using a Mac with an ARM processor, you may encounter an error when installing
`aeon[all_extras]`. This is due to the fact that some libraries included in `all_extras`
are not compatible with ARM-based processors.

The workaround is not to install some of the packages in `all_extras` and install ARM
compatible replacements for others:

- Do not install the following packages:
- `esig`
- `prophet`
- `tsfresh`
- `tslearn`
- Replace `tensorflow` package with the following packages:
- `tensorflow-macos`
- `tensorflow-metal` (optional)

Also, ARM-based processors have issues when installing packages distributed as source
distributions instead of Python wheels. To avoid this issue when installing a package,
you can try installing it through `conda` or use a prior version of the package that
was distributed as a wheel.
are not compatible with ARM-based processors. If you encounter this issue, you can try
installing soft dependencies separately.

We would appreciate if you could report any issues you encounter with the `all_extras`
installation on ARM-based processors to the [aeon GitHub issues page](https://github.com/aeon-toolkit/aeon/issues).

Also, ARM-based processors can have issues when installing packages distributed as
source distributions instead of Python wheels. To avoid this issue when installing a
package, you can try installing it through `conda` or use a prior version of the package
that was distributed as a wheel.

### `no matches found` when installing `all_extras`

Expand Down
4 changes: 2 additions & 2 deletions pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -58,7 +58,7 @@ dependencies = [
[project.optional-dependencies]
all_extras = [
"cloudpickle",
"esig>=0.9.7,<0.9.8.3; python_version < '3.11'",
"esig>=0.9.7; platform_system != 'Darwin' and python_version < '3.11'",
"gluonts>=0.12.4",
"h5py",
"imbalanced-learn",
Expand Down Expand Up @@ -99,7 +99,7 @@ dl = [
"keras<3.4",
]
unstable_extras = [
"mrsqm>=0.0.1,<0.1.0 ; platform_system == 'Darwin' and python_version < '3.12'", # requires gcc and fftw to be installed for Windows and some other OS (see http://www.fftw.org/index.html)
"mrsqm>=0.0.1,<0.1.0; platform_system == 'Darwin' and python_version < '3.12'", # requires gcc and fftw to be installed for Windows and some other OS (see http://www.fftw.org/index.html)
"pycatch22<=0.4.3", # known to fail installation on some setups
"pyfftw>=0.12.0; python_version < '3.12'", # requires fftw to be installed for Windows and some other OS (see http://www.fftw.org/index.html)
]
Expand Down