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Add AnVILBase and AnVILGCP packages
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almahmoud committed Feb 11, 2025
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2 changes: 1 addition & 1 deletion anvil-rstudio-bioconductor/Dockerfile
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Expand Up @@ -19,7 +19,7 @@ RUN usermod -g users rstudio \
&& useradd -m -s /bin/bash -N --non-unique -u 1001 welder-user

# google-cloud R packages
RUN R -e "BiocManager::install(c('AnVIL', 'DataBiosphere/Ronaldo', 'shiny', 'bigrquery', 'googleCloudStorageR', 'tidyverse', 'Seurat', 'markdown', 'SingleCellExperiment', 'GenomicFeatures', 'GenomicAlignments', 'ShortRead', 'DESeq2', 'AnnotationHub', 'ExperimentHub', 'ensembldb', 'scRNAseq', 'scran', 'Rtsne'))"
RUN R -e "BiocManager::install(c('AnVIL', 'AnVILBase', AnVILGCP', 'DataBiosphere/Ronaldo', 'shiny', 'bigrquery', 'googleCloudStorageR', 'tidyverse', 'Seurat', 'markdown', 'SingleCellExperiment', 'GenomicFeatures', 'GenomicAlignments', 'ShortRead', 'DESeq2', 'AnnotationHub', 'ExperimentHub', 'ensembldb', 'scRNAseq', 'scran', 'Rtsne'))"

ENV RSTUDIO_PORT 8001
ENV RSTUDIO_HOME /etc/rstudio
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2 changes: 1 addition & 1 deletion anvil-rstudio-bioconductor/dev_VERSION
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@@ -1 +1 @@
3.20.1-dev
3.20.2-dev

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