date_pipeline_ran no longer constantly overwritten

aofarrel · Jan 22, 2025 · 158e82d · 158e82d
1 parent 8bd57e1
commit 158e82d
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/myco_raw.wdl b/myco_raw.wdl
@@ -13,6 +13,7 @@ workflow myco {
 	input {
 		Array[Array[File]] paired_fastq_sets
 		String date_pipeline_ran
+		String? date_pipeline_previously_ran
 
 		String? output_sample_name
 		Boolean guardrail_mode                 = true
@@ -380,7 +381,7 @@ workflow myco {
 		
 	output {
 		String tbd_status = select_first([finalcode, pass])
-		String tbd_pipeline_run = date_pipeline_ran
+		String tbd_pipeline_run = select_first([date_pipeline_previously_ran, date_pipeline_ran])
 
 		# decon/fastp metadata pulled out directly
 		Float tbd_qc_q20_in = decontam_each_sample.q20_in[0]