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Mask and non-finite option refactor#254

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Commits on Mar 1, 2025

• Modified the mask handling logic to include options: "apply", "ignore", "zero-fill", "nan-fill", "apply_mask_only", and "apply_nan_only".

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• Modified masking options to use the new methods (apply, ignore, zero-fill, nan-fill) and simplified parameter documentation.

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• Added --extend-ignore E203 to the flake8 command in tox.ini. This change ensures compatibility with PEP 8 while avoiding conflicts with black's formatting rules.

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• Added Black configuration to pyproject.toml

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• Refactored masking logic and introduced new masking options. Reformatted the code with black.

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• Added "propagate" option for mask handling in specreduce. This new option extends the mask across the entire cross-dispersion axis when a masked or non-finite pixel is encountered.

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• Updated mask handling logic in FitTrace and associated tests.

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• Enhanced the Background class to include "propagate" and "ignore" as valid mask treatment options, updating the documentation and test cases accordingly. Modified the tests to validate the new op…

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• Added "propagate" mask treatment option for extractions and fixed the extraction tests.

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• Fixed mask handling for propagate case in specreduce.

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• Added mask treatment documentation with figures.

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• Codestyle fixes.

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• Added tests for mask treatment options.

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• Fixed a minor codestyle issue.

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• - Updated mask treatment docstrings.

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• Updated extraction tests to tests both 'apply' and 'ignore' mask treatment cases.

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• Fixed mask treatment docstrings.

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• Fixed mask treatment docstrings.

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• Fixed a minor codestyle issue.

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