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bartbols committed Sep 3, 2021
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## Features
1. Establish point-to-point correspondence on surface and inside volumes through non-rigid registration of distance maps.
1. Establish point-to-point correspondence on surfaces and inside volumes through non-rigid registration of distance maps.
1. Reconstruction of group-averaged muscle shape and muscle fibre orientations from magnetic resonance imaging and diffusion tensor imaging data.
1. Includes code for averaging and interpolating diffusion tensors in the [log-Euclidean domain](https://doi.org/10.1002/mrm.20965)
1. Statistical analysis of local changes in shape and architecture (pennation angles).
1. Statistical analysis of local changes in shape and fibre orientations.
1. Visualization of changes in shape and fibre orientations.

## Installation
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* [Elastix](https://elastix.lumc.nl/) (developed and tested in version 4.7)

## Getting started
The DEMO scripts will guide you through the main steps involved. Modify these scripts to customize your own analysis.
* Run the demo scripts to guide you through the main steps.
* Modify the scripts to set up your own analysis.



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