Allow non-numerical model parameters for grids #232
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: test-coverage | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies on Linux | |
| run: sudo apt-get install libgsl-dev libwebp-dev | |
| - name: Compile and install SLiM | |
| run: | | |
| # download SLiM into a separate directory to avoid CRAN errors | |
| mkdir -p ~/deps | |
| cd ~/deps | |
| # installation instructions copied from the SLiM manual: | |
| wget http://benhaller.com/slim/SLiM.zip | |
| unzip SLiM.zip | |
| cd SLiM | |
| cmake . | |
| make slim | |
| - name: Populate PATH with compiled binaries | |
| run: | | |
| export PATH="$HOME/deps/SLiM:$PATH" | |
| echo "PATH=$PATH" >> ~/.Renviron | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install devtools-related dependencies on Linux | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get install libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
| - name: Setup dedicated Python environment for slendr on Unix | |
| run: R -e 'slendr::setup_env(pip = TRUE, agree = TRUE)' | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::covr | |
| needs: coverage | |
| - name: Test coverage | |
| run: | | |
| covr::codecov( | |
| token = "${{secrets.CODECOV_TOKEN}}", | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package"), | |
| type = c("tests", "vignettes") | |
| ) | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload test results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-test-failures | |
| path: ${{ runner.temp }}/package |