BrainDance

Making neural stimulation easier.

Please check out our wiki here!

Easy installation

We recommend using conda for setting up dependencies.

conda create -n brain python=3.11
conda activate brain

Install only BrainDance:

pip install git+https://github.com/braingeneers/braindance

Install BrainDance and RT-Sort

pip install git+https://github.com/braingeneers/braindance#egg=braindance[rt-sort]

Additionally, install PyTorch with any version of CUDA as the compute platform.
If running on a Linux machine, install Torch-TensorRT as well for faster RT-Sort computation speed.

Kilosort2 integration

To use Kilosort2 within BrainDance, see the public Kilosort2 GitHub repository for installation

Open Ephys

If you want to read data in real time from an Open Ephys GUI, install the Open Ephys GUI and Falcon Output plugin.

In your Python environment, install the Open Ephys Python package.

pip install open-ephys-python-tools