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Dev#226

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atancoder merged 16 commits intomainbroadinstitute/ABC-Enhancer-Gene-Prediction:mainfrom devbroadinstitute/ABC-Enhancer-Gene-Prediction:devCopy head branch name to clipboardJun 4, 2024

+218-229

Commits

Commits on Apr 24, 2024

• update bedpe file format

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• Merge pull request #219 from broadinstitute/update_bedpe_generation

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Commits on Apr 30, 2024

• update bedpe file creation

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• Merge pull request #220 from broadinstitute/update_bedpe

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Commits on May 2, 2024

• clean up hic processing code

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• support adaptable search space for hic

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Commits on May 6, 2024

• only support 5kb res for hic

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• Update getting_started.rst

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Commits on May 8, 2024

• Merge branch 'dev' into update_hic

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• Merge pull request #221 from broadinstitute/update_hic

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Commits on May 14, 2024

• remove default for hic_psuedocount_distance in predict.py since it's confusing with default in the config

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Commits on May 29, 2024

• utilize amazon link as the encode link leads to a segfault in CircleCI

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• Merge pull request #224 from broadinstitute/update_test_hic

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Commits on May 30, 2024

• update release conda env

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Commits on Jun 4, 2024

• Update circleci config.yml

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• Merge pull request #225 from broadinstitute/atancoder-patch-1

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