Flake8 errors

broadinstitute · Feb 18, 2025 · 1f85580 · 1f85580
1 parent a976cd7
commit 1f85580
Show file tree

Hide file tree

Showing 2 changed files with 7 additions and 7 deletions.
diff --git a/src/svtk/svtk/cli/baf_test.py b/src/svtk/svtk/cli/baf_test.py
@@ -35,7 +35,7 @@ def preprocess(chrom, start, end, tbx, samples, window=None, called_samples=None
     """
     if window is None:
         window = end - start
-    
+
     bafs = deque()
     if window < 1000000:
         for record in tbx.fetch(chrom, max(1, start - window), end + window, parser=pysam.asTuple()):
@@ -47,7 +47,7 @@ def preprocess(chrom, start, end, tbx, samples, window=None, called_samples=None
             bafs.append(np.array(record))
         for record in tbx.fetch(chrom, end, end + 1000000, parser=pysam.asTuple()):
             bafs.append(np.array(record))
-    
+
     bafs = pd.DataFrame(np.array(bafs))
     if bafs.empty:
         return bafs, bafs, called_samples
@@ -65,7 +65,7 @@ def preprocess(chrom, start, end, tbx, samples, window=None, called_samples=None
 
     if bafs.empty:
         return bafs, bafs, called_samaples
-    
+
     bafs['pos'] = bafs.pos.astype(int)
     bafs['baf'] = bafs.baf.astype(float)
     bafs.loc[bafs.pos <= start, 'region'] = 'before'
@@ -79,7 +79,7 @@ def preprocess(chrom, start, end, tbx, samples, window=None, called_samples=None
     for colname in cols:
         if colname not in het_counts.columns:
             het_counts[colname] = 0
-    
+
     # Report BAF for variants inside CNV
     called_bafs = bafs.loc[bafs.region == 'inside'].copy()
     return het_counts, called_bafs, called_samaples
@@ -148,8 +148,8 @@ def main(argv):
                 type = dat[5]
                 try:
                     het_counts, called_bafs, samplelist = preprocess(
-                        chrom, start, end, tbx, samples=splist, 
-                        outlier_sample_ids=outlier_samples, 
+                        chrom, start, end, tbx, samples=splist,
+                        outlier_sample_ids=outlier_samples,
                         called_samples=samplelist
                     )
                 except ValueError:

diff --git a/src/svtk/svtk/pesr/pesr_test.py b/src/svtk/svtk/pesr/pesr_test.py
@@ -146,7 +146,7 @@ def choose_background(self, record, whitelist=None, blacklist=None):
         non_outlier_called = [s for s in called if s not in self.outlier_sample_ids]
         if len(non_outlier_called) > 0:
             called = non_outlier_called
-        
+
         non_outlier_background = [s for s in background if s not in self.outlier_sample_ids]
         if len(non_outlier_background) > 0:
             background = non_outlier_background