Patch incomplete logic in complex reformatting script (#776)

src/sv-pipeline/scripts/reformat_CPX_bed_and_generate_script.py

@@ -196,7 +196,7 @@ def extract_bp_list_v4(coordinates, segments, small_sv_size_threshold):
             structures = ['abc', 'c^bc']
         else:
             structures = ['ab', 'b^ab']
-    elif del_bp[1] > dup_bp[1]:
+    elif del_bp[1] >= dup_bp[1]:
         breakpoints = [del_bp[0]] + dup_bp + del_bp[1:]
         if del_bp[2] - del_bp[1] > small_sv_size_threshold:
             structures = ['abc', 'aba^']