Make preemptible_tries explicitly optional

broadinstitute · Feb 26, 2024 · 357efc1 · 357efc1
1 parent 84704f9
commit 357efc1
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/wdl/TrainGqRecalibrator.wdl b/wdl/TrainGqRecalibrator.wdl
@@ -52,7 +52,7 @@ task TrainGqRecalibratorTask {
         Float mem_scale_vcf_size = 25.2
         Float mem_scale_num_entries = "3.7e-7"
         Float mem_gb_overhead = 1.5
-        Int preemptible_tries = 3
+        Int? preemptible_tries
     }
 
     Int disk_gb = round(1000 + size([train_vcf, train_vcf_index, ped_file, truth_file], "GiB") +
@@ -69,7 +69,7 @@ task TrainGqRecalibratorTask {
     runtime {
         docker: gatk_docker
         cpu: 1
-        preemptible: preemptible_tries
+        preemptible: select_first([preemptible_tries, 3])
         max_retries: 1
         memory: mem_gb + " GiB"
         disks: "local-disk " + disk_gb + " HDD"