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Resolve some more conflicts
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mwalker174 committed Feb 26, 2024
1 parent 3699b93 commit 4b856e0
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions wdl/CrossValidateGqRecalibrator.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ workflow CrossValidateGqRecalibrator {
CrossValidationVcfs? pre_computed_cross_validation_vcfs
}

call train_recal.TrainGqRecalibrator {
call train_recal.TrainGqRecalibrator as DirectTrainGqRecalibrator {
input:
train_vcf=train_vcf,
train_vcf_index=train_vcf_index,
Expand All @@ -50,7 +50,7 @@ workflow CrossValidateGqRecalibrator {
vcf=train_vcf,
vcf_index=train_vcf_index,
genome_tracks=genome_tracks,
gq_recalibrator_model_file=TrainGqRecalibrator.output_gq_recalibrator_model_file,
gq_recalibrator_model_file=DirectTrainGqRecalibrator.output_gq_recalibrator_model_file,
recalibrate_gq_args=recalibrate_gq_args,
gatk_docker=gatk_docker,
sv_base_mini_docker=sv_base_mini_docker,
Expand Down Expand Up @@ -173,7 +173,7 @@ workflow CrossValidateGqRecalibrator {
}

output {
File output_gq_recalibrator_model_file = TrainGqRecalibrator.output_gq_recalibrator_model_file
File output_gq_recalibrator_model_file = DirectTrainGqRecalibrator.output_gq_recalibrator_model_file
File filtered_vcf = DirectGqRecalibrator.filtered_vcf
File filtered_vcf_index = DirectGqRecalibrator.filtered_vcf_index
File cross_validated_filtered_vcf = MergeRecalibratedTestVcfs.merged_vcf
Expand Down

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