fix(tools): get_sbml_model, syntax

brsynth · Dec 2, 2023 · 31cde20 · 31cde20
1 parent deb6be6
commit 31cde20
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/tools/get_sbml_model/get_sbml_model.xml b/tools/get_sbml_model/get_sbml_model.xml
@@ -10,11 +10,11 @@
     <command detect_errors="exit_code"><![CDATA[
         #import json
         #if str($cond_src.from_src) == 'from_bigg'
-            #set $hostname=json.load(open($__tool_directory__ + '/host.json'))[$cond_src.hostid]
+            #set hostname=json.load(open($__tool_directory__ + '/host.json'))[$cond_src.hostid]
             curl -o - 'http://bigg.ucsd.edu/static/models/${cond_src.hostid}.xml.gz' | gunzip > '$model' &&
         #else
-            #set $hostname=$cond_src.hostname
-            #set $model=$cond_src.input_file
+            #set hostname=$cond_src.hostname
+            #set model=$cond_src.input_file
         #end if
         python '$__tool_directory__/'get_infos.py
             '$model'

diff --git a/tools/get_sbml_model/host.json b/tools/get_sbml_model/host.json
@@ -1,6 +1,6 @@
 {
-    "iCN718i", "Acinetobacter baumannii AYE",
-    "iYO844", "Bacillus subtilis subsp. subtilis str. 168",
+    "iCN718i": "Acinetobacter baumannii AYE",
+    "iYO844": "Bacillus subtilis subsp. subtilis str. 168",
     "iRC1080": "Chlamydomonas reinhardtii",
     "iCN900": "Clostridioides difficile 630",
     "iHN637": "Clostridium ljungdahlii DSM 13528",