fix(tools): get_sbml_model, try syntax

brsynth · Dec 7, 2023 · 83caada · 83caada
1 parent 36977a8
commit 83caada
Showing 1 changed file with 2 additions and 6 deletions.
diff --git a/tools/get_sbml_model/get_sbml_model.xml b/tools/get_sbml_model/get_sbml_model.xml
@@ -8,13 +8,9 @@
         <requirement type="package" version="0.1.1">taxonid</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        #import json
+        #import re
         #if str($cond_src.from_src) == 'from_bigg'
-            echo 'Display' &&
-            echo '$cond_src.hostid.get_display_text()' &&
-            echo '$cond_src.hostid.input' &&
-            #set host=json.load(open($__tool_directory__ + '/host.json'))
-            #set hostname=$host[str($cond_src.hostid)]
+            #set hostname= re.sub(r'\s\(\w+\)', '', $cond_src.hostid.get_display_text())
             curl -o - 'http://bigg.ucsd.edu/static/models/${cond_src.hostid}.xml.gz' | gunzip > '$model' &&
         #else
             #set hostname=$cond_src.hostname