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Calico

Popular repositories Loading

  1. basenji basenji Public

    Sequential regulatory activity predictions with deep convolutional neural networks.

    Python 427 126

  2. borzoi borzoi Public

    RNA-seq prediction with deep convolutional neural networks.

    Python 133 15

  3. scBasset scBasset Public

    Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

    Jupyter Notebook 98 13

  4. solo solo Public

    software to detect doublets

    Python 90 13

  5. scnym scnym Public

    Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

    Python 74 13

  6. baskerville baskerville Public

    Machine learning methods for DNA sequence analysis.

    Python 37 9

Repositories

Showing 10 of 45 repositories
  • baskerville Public

    Machine learning methods for DNA sequence analysis.

    Python 37 Apache-2.0 9 1 4 Updated Mar 20, 2025
  • borzoi Public

    RNA-seq prediction with deep convolutional neural networks.

    Python 133 Apache-2.0 15 4 3 Updated Mar 20, 2025
  • metstats Public

    Library for standardized analysis and visualization of metabolomics data

    R 2 MIT 1 0 0 Updated Mar 18, 2025
  • CalicoLipidLibrary Public

    In silico Lipid fragmentation patterns

    Python 0 MIT 0 3 1 Updated Mar 13, 2025
  • do_bwd Public

    Python implementation of extracting body weight dynamics in diversity outbred mice using ARHMM.

    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 25, 2025
  • westminster Public

    Benchmarking baskerville models for regulatory sequence activity prediction

    Python 1 Apache-2.0 1 0 3 Updated Feb 5, 2025
  • scBasset Public

    Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

    Jupyter Notebook 98 Apache-2.0 13 4 0 Updated Jan 17, 2025
  • scnym Public

    Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

    Python 74 Apache-2.0 13 7 5 Updated Dec 28, 2024
  • solo Public

    software to detect doublets

    Python 90 MIT 13 7 1 Updated Dec 28, 2024
  • borzoi-paper Public

    Analyses related to the Borzoi paper.

    Jupyter Notebook 9 Apache-2.0 1 1 0 Updated Oct 23, 2024

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