Merge branch 'main' of https://github.com/caltechlibrary/cell-atlas

README.md

@@ -32,20 +32,18 @@ python _build.py
 ```
 
 <u>This will delete the `site/` directory in the this script's working directory</u>. 
-Videos are will not be included in the site build by default and will only be included 
-in the generated site if there exists a `videos` directory in this script's working directory.
-Supplemental files (video preview images and pdb files) are required for the
+Videos are will not be included in the site build and need to be moved to a `videos` directory 
+in 'site' directory.
+Supplemental files (video preview images, narration, and pdb files) are required for the
 site to function completely and are available to
-[download from CaltechDATA](https://doi.org/10.22002/D1.2100)
+[download from CaltechDATA](https://doi.org/10.22002/D1.20040)
 
 
 Offline versions of the cell atlas are automatically generated in the
-`cell_atlas_offline` and `cell_atlas_offline_lite` directories. In order to
-package these for release, you need to copy in the full resolution or 480p
-videos into a directory called `videos`. You will also need to copy the 
-'stillimages' folder of preview images for the
-movies to the 'img' folder. Then zip up the cell atlas using the 
-command `zip -rX cell_atlas_offline_lite.zip *`
+`cell_atlas_offline` and `cell_atlas_offline_lite` directories, assuming you
+have "video", "videos-480p", "narration", and "stillimages" directories present. 
+In order to zip up the offline version, navigate to `cell_atlas_offline` and `cell_atlas_offline_lite` directories 
+and use the command `zip -rX cell_atlas_offline_lite.zip *`
 
 Getting help
 ------------
@@ -61,9 +59,9 @@ You can submit change requests by submitting a pull request through GitHub.
 License
 -------
 
-Software produced by the Caltech Library is Copyright (C) 2020, Caltech.  This software is freely distributed under a BSD/MIT type license.  Please see the [LICENSE](LICENSE) file for more information.
+Software produced by the Caltech Library is Copyright (C) 2022, Caltech.  This software is freely distributed under a BSD/MIT type license.  Please see the [LICENSE](LICENSE) file for more information.
 
-The book text is (C) 2020, Caltech.
+The book text is (C) 2022, Caltech.
 
 Authors and Acknowledgments
 ---------------------------

cd_metadata.json

@@ -2,13 +2,13 @@
   "descriptions": [
     {
       "descriptionType": "Abstract",
-      "description": "The offline version 2.0 of \"The Atlas of Bacterial & Archaeal Cell Structure\" by Catherine M. Oikonomou & Grant J. Jensen"
+      "description": "The offline version 2.1 of \"The Atlas of Bacterial & Archaeal Cell Structure\" by Catherine M. Oikonomou & Grant J. Jensen"
     }
   ],
   "relatedIdentifiers": [
     {
       "relatedIdentifier":
-      "https://github.com/caltechlibrary/cell-atlas/releases/tag/v2.0",
+      "https://github.com/caltechlibrary/cell-atlas/releases/tag/v2.1",
       "relationType": "IsDerivedFrom",
       "relatedIdentifierType": "URL"
     }
@@ -33,19 +33,19 @@
       "subject": "Jensen Lab"
     }
   ],
-  "version": "v2.0",
+  "version": "v2.1",
   "titles": [
     {
-      "title": "Atlas of Bacterial and Archaeal Cell Structure - Offline Version 2.0"
+      "title": "Atlas of Bacterial and Archaeal Cell Structure - Offline Version 2.1"
     }
   ],
   "dates": [
     {
-      "date": "2021-09-03",
+      "date": "2022-02-18",
       "dateType": "Issued"
     }
   ],
-  "publicationYear": "2021",
+  "publicationYear": "2022",
   "publisher": "CaltechDATA",
   "creators": [
     {

cd_supplemental_metadata.json

@@ -2,13 +2,13 @@
   "descriptions": [
     {
       "descriptionType": "Abstract",
-      "description": "Supplemental materials (pdb files and images) for version 2.0 of \"The Atlas of Bacterial & Archaeal Cell Structure\" by Catherine M. Oikonomou & Grant J. Jensen"
+      "description": "Supplemental materials (pdb files, images, and narration) for version 2.1 of \"The Atlas of Bacterial & Archaeal Cell Structure\" by Catherine M. Oikonomou & Grant J. Jensen"
     }
   ],
   "relatedIdentifiers": [
     {
       "relatedIdentifier":
-      "https://github.com/caltechlibrary/cell-atlas/releases/tag/v2.0",
+      "https://github.com/caltechlibrary/cell-atlas/releases/tag/v2.1",
       "relationType": "IsSupplementTo",
       "relatedIdentifierType": "URL"
     }
@@ -33,15 +33,15 @@
       "subject": "Jensen Lab"
     }
   ],
-  "version": "v2.0",
+  "version": "v2.1",
   "titles": [
     {
       "title": "Supplemental Materials for the Atlas of Bacterial and Archaeal Cell Structure"
     }
   ],
   "dates": [
     {
-      "date": "2021-08-30",
+      "date": "2022-02-18",
       "dateType": "Issued"
     }
   ],

codemeta.json

@@ -6,7 +6,7 @@
   "codeRepository": "https://github.com/caltechlibrary/cell-atlas",
   "issueTracker": "https://github.com/caltechlibrary/cell-atlas/issues",
   "license": "https://data.caltech.edu/license",
-  "version": "2.0.0",
+  "version": "2.1.0",
   "author": [
     {
       "@type": "Person",

upload_supplement.py

@@ -9,6 +9,6 @@
 
 production = True
 
-response = caltechdata_write(metadata, token, ['stillimages.zip','pdbs.zip'], production)
+response = caltechdata_write(metadata, token, ['narration.zip','stillimages.zip','pdbs.zip'], production)
 print(response)