load dependencies only in shiny app (not after install)

ceefluz · May 13, 2019 · 4e5bfa3 · 4e5bfa3
1 parent 9dcfe38
commit 4e5bfa3
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Showing 2 changed files with 6 additions and 7 deletions.
diff --git a/dependencies.R b/dependencies.R
@@ -28,7 +28,4 @@ new.packages <- required_packages[!(required_packages %in% installed.packages()[
 
 if (length(new.packages)) {
   install.packages(new.packages)
-}
-
-# load all packages
-lapply(required_packages, require, character.only = TRUE)
+}
diff --git a/global.R b/global.R
@@ -7,12 +7,14 @@
 # INSTALL DEPENDENCIES ----------------------------------------------------
 
 source('dependencies.R')
+# load all packages
+lapply(required_packages, require, character.only = TRUE)
 
 # DATA TRANSFORMATION AND NEW VARIABLES -----------------------------------
 
-admissions <- read_csv("admissions.csv")
-antimicrobials <- read_csv("antimicrobials.csv")
-microbiology <- read_csv("microbiology.csv")
+admissions <- read_csv("data/admissions.csv")
+antimicrobials <- read_csv("data/antimicrobials.csv")
+microbiology <- read_csv("data/microbiology.csv")
 
 admissions <- admissions %>%
   mutate(year = year(adm_start_date),