Pre-release tasks

documentation/importdata/importsettings/dataset.rst

@@ -38,4 +38,17 @@ googleAnalyticsId
 initialSessionState
   *Block.* The default tabs, popups and recently used genes and queries for a new session. Most easily set by using the save button on the header (only shown to managers).
 
+genomeBrowserChannelSets
+  *List.*  Default:[].  A list of exmaple channel configurations that will be shown on the genome browser sidebar.
+  The block can contain the following keys:
+    channels
+      *List (required).* List of serialised channels.
+
+    name
+      *Text (required).* Channel set name.
+
+    description
+      *Text (required).* Channel set description.
+
+
 

documentation/importdata/importsettings/datatable.rst

@@ -61,22 +61,15 @@ storedQueries
       *Text (required).* a display name for this query.
 
 
-maxCountQueryRecords
-  *Value.*  Default:200000.  Defines the maximum number of records that will be downloaded to the client.
-  This limit influences views that display individual data items, such as scatter plots and geographical map views.
-  If not specified, this defaults to 200,000.
-
-maxCountQueryAggregated
-  *Value.*  Default:1000000.  Defines the maximum number of records that will be queried on the server for views that present
-  data items in an aggregated way, such as histograms and bar graphs.
-  If not specified, this defaults to 1,000,000.
-
 fetchRecordCount
   *Boolean.*  Default:False.  .
 
 quickFindFields
   *PropertyIDs.* The list of properties will be used by some tools in the software that allow the user to quickly find a (set of) item(s).
 
+previewProperties
+  *PropertyIDs.* The list of properties that will be shown (along with the primary key) when the item is previewed such as in genome browser .
+
 disableSubsets
   *Boolean.* If set, there will be no subsets options for this data table.
 

documentation/importdata/importsettings/datatable_dataitemviews.rst

@@ -67,9 +67,6 @@ This is achieved by combining information from two data tables:
 A set of properties of the current table is used to define pie sizes on all pie charts.
 For each pie and location combination there should be a property in the data table,
 containing the relative size of that specific pie
-pieChartSize
-  *Value (required).* Displayed size of the largest pie chart(only applies if *type* is PieChartMap).
-
 mapCenter
   *Block (required).* Specifies the map center in the start view(only applies if *type* is PieChartMap).
   The block can contain the following keys:
@@ -86,10 +83,6 @@ dataType
 
   - ``Fraction``: .
 
-positionOffsetFraction
-  *Value (required).* An offset between the pie chart location and the actual chart,
-  used to achieve a nice (ideally non-overlapping) view(only applies if *type* is PieChartMap).
-
 locationDataTable
   *Text (required).* ID of the data table containing the locations
   (this table should have properties with ``GeoLongitude`` and ``GeoLatitude`` data types)(only applies if *type* is PieChartMap).

documentation/importdata/importsettings/datatable_properties.rst

@@ -114,9 +114,9 @@ browserShowOnTop
   *Boolean.* Indicates that the track will be shown in the top (non-scrolling) area of the genome browser.
   In this case, it will always be visible (only applies if *showInBrowser* is True).
 
-channelColor
-  *Text.*  Default:rgb(0,0,0).  Colour used to display this property in the genome browser. Formatted as ``"rgb(r,g,b)"``
-  (only applies if *showInBrowser* is True).
+colour
+  *Text.* Colour used to display this property. Formatted as ``"rgb(r,g,b)"`` or ``"#HHHHHH"``
+  .
 
 defaultVisible
   *Boolean.*  Default:True.  .