Sort bowtie2 outputs for reproducibility (#365) #2038
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "idseq_bench_3.default_viral.json", "idseq_bench_5.default_viral.json", "short-read-mngs-benchmarks.default_viral.html", "short-read-mngs-benchmarks.default_viral.ipynb".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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