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rzlim08 committed May 23, 2024
1 parent 1bb6a26 commit 1879135
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion lib/idseq-dag/idseq_dag/steps/run_assembly.py
Original file line number Diff line number Diff line change
Expand Up @@ -237,7 +237,7 @@ def generate_read_to_contig_mapping(assembled_contig,
args=samtools_sort_params
)
)

contig_stats, _ = generate_info_from_sam(output_bowtie_sam, read2contig, duplicate_cluster_sizes_path=duplicate_cluster_sizes_path)
with open(output_contig_stats, 'w') as ocf:
json.dump(contig_stats, ocf)
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