Pin requests to 2.31.0 (#362)

* Pin requests to 2.31.0 * Change pinned version for short-read-mngs, which is stuck in python 3.6 * Pin requests version in dev requirements
chanzuckerberg · May 21, 2024 · eb1e2b6 · eb1e2b6
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diff --git a/requirements-dev.txt b/requirements-dev.txt
@@ -6,7 +6,7 @@ flake8
 ruamel.yaml
 taxadb
 boto3
-requests
+requests==2.31.0
 scikit-learn
 biopython
-marisa-trie
+marisa-trie
diff --git a/workflows/long-read-mngs/Dockerfile b/workflows/long-read-mngs/Dockerfile
@@ -41,7 +41,7 @@ RUN apt-get -qq update && apt-get -qq -y install \
     zlib1g-dev \
     && locale-gen en_US.UTF-8
 
-RUN pip3 install boto3 marisa-trie==0.7.7 requests biopython pandas pysam scipy==1.10.0
+RUN pip3 install boto3 marisa-trie==0.7.7 requests==2.31.0 biopython pandas pysam scipy==1.10.0
 
 ADD https://raw.githubusercontent.com/chanzuckerberg/miniwdl/v1.1.5/examples/clean_download_cache.sh /usr/local/bin
 RUN chmod +x /usr/local/bin/clean_download_cache.sh

diff --git a/workflows/short-read-mngs/Dockerfile b/workflows/short-read-mngs/Dockerfile
@@ -78,7 +78,7 @@ RUN apt-get -q install -y \
         spades \
         ncbi-blast+
 
-RUN pip3 install boto3==1.23.10 marisa-trie==0.7.7 pytest
+RUN pip3 install boto3==1.23.10 marisa-trie==0.7.7 pytest requests==2.27.1
 RUN pip3 install miniwdl==${MINIWDL_VERSION} miniwdl-s3parcp==0.0.5 miniwdl-s3upload==0.0.4
 RUN pip3 install https://github.com/chanzuckerberg/miniwdl-plugins/archive/f0465b0.zip#subdirectory=sfn-wdl
 RUN pip3 install https://github.com/chanzuckerberg/s3mi/archive/v0.8.0.tar.gz