resolve error

christinehou11 · Sep 4, 2024 · b698f91 · b698f91
1 parent 18cdc46
commit b698f91
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diff --git a/.gitignore b/.gitignore
@@ -3,4 +3,5 @@
 .RData
 .Ruserdata
 .DS_Store
-docs/
+docs/
+*.Rproj
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: HuBMAPR
 Title: Interface to 'HuBMAP'
-Version: 0.99.2
+Version: 0.99.3
 Authors@R:
     c(person(
         given = "Christine",
@@ -52,8 +52,7 @@ Suggests:
     testthat (>= 3.0.0),
     knitr,
     rmarkdown,
-    BiocStyle,
-    ggplot2
+    BiocStyle
 VignetteBuilder: knitr
 biocViews: Software, SingleCell
 URL: https://christinehou11.github.io/HuBMAPR/, https://github.com/christinehou11/HuBMAPR

diff --git a/README.md b/README.md
@@ -28,15 +28,6 @@ Additionally, you can install development version from
 BiocManager::install("christinehou11/HuBMAPR")
 ```
 
-Install additional required packages before running package codes in
-vignettes.
-
-``` r
-pkgs <- c("dplyr", "tidyr", "ggplot2")
-required_pkgs <- pkgs[!pkgs %in% rownames(installed.packages())]
-BiocManager::install(required_pkgs)
-```
-
 #### Use
 
 View the article [Explore Human BioMelecular Atlas Program Data

diff --git a/vignettes/hubmapr_vignettes.Rmd b/vignettes/hubmapr_vignettes.Rmd
@@ -39,14 +39,6 @@ remotes::install("christinehou11/HuBMAPR")
 
 ## Load Necessary Packages
 
-Install additional required packages before running package codes.
-
-```{r 'pkg install', eval=FALSE}
-pkgs <- c("dplyr", "tidyr")
-required_pkgs <- pkgs[!pkgs %in% rownames(installed.packages())]
-BiocManager::install(required_pkgs)
-```
-
 Load additional packages. `dplyr` package is widely used in this vignettes to
 conduct data wrangling and specific information extraction.
-Original file line number
+Diff line change
@@ Expand Up / @@ -3,4 +3,5 @@ @@
     .RData
     .Ruserdata
     .DS_Store
-    docs/
+    docs/
+    *.Rproj