Rapid Impact Analysis of B 1.1.7 Variant on the Spread of SARS-CoV-2 in North Carolina

This analysis examines the potential impact of the B1.1.7 variant on the tranmission of SARS-CoV-2 in North Carolina.

Running Analysis

Ensure that the following package is installed (non-CRAN):

install.packages("remotes")
remotes::install_github("conedatascience/nccovid")

Data

The data reviewed to run this analysis are available in the data-raw directory.

Analysis

In order to reproduce the analysis, run:

• R/generate_variant.R to fit the UK data for the new variant

• R/simulate_outcomes.R to run the stochastic, discrete ODEs