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Minor updates to sync with latest zarr version #113

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Minor updates to sync with latest zarr version #113

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9cb29cf
Minor updates to sync with latest zarr version
anwai98 Jan 11, 2025
d1526ef
Pin zarr to recommended versions
anwai98 Jan 11, 2025
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2 changes: 1 addition & 1 deletion elf/io/extensions.py
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Original file line number Diff line number Diff line change
Expand Up @@ -133,7 +133,7 @@ def zarr_open(*args, **kwargs):
return z

register_filetype(
zarr_open, N5_EXTS + ZARR_EXTS, zarr.hierarchy.Group, zarr.core.Array, True
zarr_open, N5_EXTS + ZARR_EXTS, zarr.Group, zarr.Array, True
)
except ImportError:
zarr = None
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2 changes: 1 addition & 1 deletion elf/io/files.py
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Expand Up @@ -95,7 +95,7 @@ def is_h5py(node) -> bool:
def is_zarr(node) -> bool:
"""Check if the argument is a zarr object.
"""
return zarr and isinstance(node, (zarr.core.Array, zarr.hierarchy.Group))
return zarr and isinstance(node, (zarr.Array, zarr.Group))


def is_pyn5(node) -> bool:
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1 change: 1 addition & 0 deletions environment.yaml
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Expand Up @@ -21,3 +21,4 @@ dependencies:
- threadpoolctl
- vigra
- z5py
- zarr >=3,<4
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