uganda fp runs

lfm_data_utilities/thumbnail_labelling/uganda_fps.sh

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+#! /usr/bin/env bash
+
+
+# for each of the runs here:
+#
+# /hpc/projects/group.bioengineering/LFM_scope/misc/uganda-fp-thumbnails/frightful-wendigo-1931_false_positives.csv
+# converted and cleaned to get
+# /hpc/projects/group.bioengineering/LFM_scope/misc/uganda-fp-thumbnails/frightful-wendigo-1931_false_positive_runs.txt
+
+while read run_folder; do
+  run_name=$(basename $run_folder)
+
+  ./thumbnail_sort_labelling.py create \
+    "/hpc/projects/group.bioengineering/LFM_scope/misc/uganda-fp-thumbnails/$run_name" \
+    --path-to-run "$run_folder" \
+    --ignore-class healthy --ignore-class misc --ignore-class wbc \
+    --thumbnail-type yogo-confidence \
+    --min-confidence 0.9 \
+    --obj-thresh 0.5 \
+    --iou-thresh 0.5 \
+    --path-to-pth /hpc/projects/group.bioengineering/LFM_scope/yogo_models/all-models/frightful-wendigo-1931/best.pth
+done < /hpc/projects/group.bioengineering/LFM_scope/misc/uganda-fp-thumbnails/frightful-wendigo-1931_false_positive_runs.txt