MSAOnt Population Software

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This software generates an instance of the multiple sequence alignment ontology (MSAOnt) from an aligned fasta or cma file.

Requires Python version 2.7

License: MIT

Python dependencies

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Please ensure the following Python packages are installed via pip:

• Biopython <http://biopython.org/wiki/Main_Page>
• RDFLib <https://github.com/RDFLib/rdflib>
• progress <https://pypi.python.org/pypi/progress>
• biocma <https://github.com/etal/biocma>

Note

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If you are populating MSAOnt with a cma file, the first entry must be an aligned gapless consensus sequence.