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{bio}[GCC/13.3.0] Sabre v2013-09-28 #22222

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@boegel boegel commented Jan 28, 2025

(created using eb --new-pr)

@boegel boegel added the update label Jan 28, 2025
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Updated software Sabre-2013-09-28-GCC-13.3.0.eb

Diff against Sabre-2013-09-28-GCC-12.2.0.eb

easybuild/easyconfigs/s/Sabre/Sabre-2013-09-28-GCC-12.2.0.eb

diff --git a/easybuild/easyconfigs/s/Sabre/Sabre-2013-09-28-GCC-12.2.0.eb b/easybuild/easyconfigs/s/Sabre/Sabre-2013-09-28-GCC-13.3.0.eb
index 184fad2394..79efa49a25 100644
--- a/easybuild/easyconfigs/s/Sabre/Sabre-2013-09-28-GCC-12.2.0.eb
+++ b/easybuild/easyconfigs/s/Sabre/Sabre-2013-09-28-GCC-13.3.0.eb
@@ -12,14 +12,14 @@ description = """Sabre is a tool that will demultiplex barcoded reads
  after stripping the barcode from the read (and also stripping
  the quality values of the barcode bases)."""
 
-toolchain = {'name': 'GCC', 'version': '12.2.0'}
+toolchain = {'name': 'GCC', 'version': '13.3.0'}
 
 source_urls = ['https://github.com/najoshi/sabre/archive/']
 sources = [{'download_filename': '%s.tar.gz' % local_commit, 'filename': SOURCE_TAR_GZ}]
 checksums = ['8101eda078eded6c755d607a83ad5c659023dad9f0f2dadc11445c0ca305bf02']
 
 dependencies = [
-    ('zlib', '1.2.12'),
+    ('zlib', '1.3.1'),
 ]
 
 buildopts = 'CC="$CC" CFLAGS="$CFLAGS"'

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boegel commented Jan 28, 2025

@boegelbot please test @ jsc-zen3

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@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22222 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22222 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 5611

Test results coming soon (I hope)...

- notification for comment with ID 2618556237 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/8c1b09148d317442477bb6c760106cd4 for a full test report.

@boegel boegel added this to the 4.x milestone Jan 28, 2025
@boegel boegel requested a review from laraPPr January 28, 2025 10:21
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boegel commented Jan 28, 2025

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node4013.donphan.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz (cascadelake), 1 x NVIDIA NVIDIA A2, 545.23.08, Python 3.6.8
See https://gist.github.com/boegel/bc0516dfc0a625e67e7f3808c13f496d for a full test report.

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boegel commented Jan 28, 2025

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3139.skitty.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.9.18
See https://gist.github.com/boegel/6d295d8d3a2cf5b1b199e95442d64e0e for a full test report.

@smoors smoors modified the milestones: 4.x, release after 4.9.4 Jan 28, 2025
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lgtm

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smoors commented Jan 28, 2025

Going in, thanks @boegel!

@smoors smoors merged commit 949c266 into easybuilders:develop Jan 28, 2025
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3 participants