Merge pull request #2 from egarpor/1.0.7

v1.0.7

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: rotasym
 Type: Package
 Title: Tests for Rotational Symmetry on the Hypersphere
-Version: 1.0-6
-Date: 2019-08-26
+Version: 1.0.7
+Date: 2020-03-08
 Authors@R: c(
      person(given = "Eduardo", family = "García-Portugués",
             role = c("aut", "cre"), email = "edgarcia@est-econ.uc3m.es"),
@@ -11,7 +11,7 @@ Authors@R: c(
      )
 Description: Implementation of the tests for rotational symmetry on the
      hypersphere proposed in García-Portugués, Paindaveine and Verdebout
-     (2019) <arXiv:1706.05030>. The package also implements the proposed
+     (2020) <doi:10.1080/01621459.2019.1665527>. The package also implements the proposed
      distributions on the hypersphere, based on the tangent-normal
      decomposition, and allows for the replication of the data
      application considered in the paper.
@@ -27,4 +27,5 @@ LinkingTo: Rcpp, RcppArmadillo
 URL: https://github.com/egarpor/rotasym
 BugReports: https://github.com/egarpor/rotasym
 Encoding: UTF-8
-RoxygenNote: 6.1.1
+RoxygenNote: 7.0.2
+Roxygen: list(old_usage = TRUE)

LICENSE.md

@@ -1,7 +1,7 @@
 GNU General Public License
 ==========================
 
-_Version 3, 29 June 2007_  
+_Version 3, 29 June 2007_
 _Copyright © 2007 Free Software Foundation, Inc. &lt;<http://fsf.org/>&gt;_
 
 Everyone is permitted to copy and distribute verbatim copies of this license
@@ -552,8 +552,8 @@ to the start of each source file to most effectively state the exclusion of warr
 and each file should have at least the “copyright” line and a pointer to
 where the full notice is found.
 
-    <one line to give the program's name and a brief idea of what it does.>
-    Copyright (C) 2019 Eduardo García-Portugués; Davy Paindaveine; Thomas Verdebout
+    rotasym: Tests for Rotational Symmetry on the Hypersphere
+    Copyright (C) 2020 Eduardo García-Portugués; Davy Paindaveine; Thomas Verdebout
 
     This program is free software: you can redistribute it and/or modify
     it under the terms of the GNU General Public License as published by
@@ -573,7 +573,7 @@ Also add information on how to contact you by electronic and paper mail.
 If the program does terminal interaction, make it output a short notice like this
 when it starts in an interactive mode:
 
-    rotasym Copyright (C) 2019 Eduardo García-Portugués; Davy Paindaveine; Thomas Verdebout
+    rotasym Copyright (C) 2020 Eduardo García-Portugués; Davy Paindaveine; Thomas Verdebout
     This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'.
     This is free software, and you are welcome to redistribute it
     under certain conditions; type 'show c' for details.

R/TE.R

@@ -28,9 +28,10 @@
 #' \code{r_U = \link{r_ACG}}.
 #' @author Eduardo García-Portugués, Davy Paindaveine, and Thomas Verdebout.
 #' @references
-#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2019) On optimal tests
+#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2020) On optimal tests
 #' for rotational symmetry against new classes of hyperspherical distributions.
-#' \emph{arXiv:1706.05030}. \url{https://arxiv.org/abs/1706.05030}
+#' \emph{Journal of the American Statistical Association}, to appear.
+#' \url{https://doi.org/10.1007/s11222-017-9790-2}
 #' @examples
 #' ## Simulation and density evaluation for p = 2
 #'

R/TM.R

@@ -29,9 +29,10 @@
 #' \code{r_U = \link{r_vMF}}.
 #' @author Eduardo García-Portugués, Davy Paindaveine, and Thomas Verdebout.
 #' @references
-#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2019) On optimal tests
+#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2020) On optimal tests
 #' for rotational symmetry against new classes of hyperspherical distributions.
-#' \emph{arXiv:1706.05030}. \url{https://arxiv.org/abs/1706.05030}
+#' \emph{Journal of the American Statistical Association}, to appear.
+#' \url{https://doi.org/10.1007/s11222-017-9790-2}
 #' @examples
 #' ## Simulation and density evaluation for p = 2
 #'

R/cosines-signs.R

@@ -86,9 +86,10 @@
 #' \code{check_X = TRUE} prevents this from happening.
 #' @author Eduardo García-Portugués, Davy Paindaveine, and Thomas Verdebout.
 #' @references
-#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2019) On optimal tests
+#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2020) On optimal tests
 #' for rotational symmetry against new classes of hyperspherical distributions.
-#' \emph{arXiv:1706.05030}. \url{https://arxiv.org/abs/1706.05030}
+#' \emph{Journal of the American Statistical Association}, to appear.
+#' \url{https://doi.org/10.1007/s11222-017-9790-2}
 #' @examples
 #' # Gamma_theta
 #' theta <- c(0, 1)

R/estimators.R

@@ -33,9 +33,10 @@
 #' use is recommended if the rotationally symmetric data is not unimodal.
 #' @author Eduardo García-Portugués, Davy Paindaveine, and Thomas Verdebout.
 #' @references
-#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2019) On optimal tests
+#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2020) On optimal tests
 #' for rotational symmetry against new classes of hyperspherical distributions.
-#' \emph{arXiv:1706.05030}. \url{https://arxiv.org/abs/1706.05030}
+#' \emph{Journal of the American Statistical Association}, to appear.
+#' \url{https://doi.org/10.1007/s11222-017-9790-2}
 #' @examples
 #' # Sample from a vMF
 #' n <- 200

R/rotasym-package.R

@@ -3,17 +3,18 @@
 #' @title \pkg{rotasym} -- Tests for Rotational Symmetry on the Hypersphere
 #'
 #' @description Implementation of the tests for rotational symmetry on the
-#' hypersphere proposed in the paper ``On optimal tests for rotational symmetry
-#' against new classes of hyperspherical distribution''. The package
-#' implements the proposed distributions on the hypersphere based on the
-#' tangent-normal decomposition. It also allows for the replication of the
-#' data application considered in the paper.
+#' hypersphere proposed in García-Portugués, Paindaveine and Verdebout (2020)
+#' <doi:10.1080/01621459.2019.1665527>. The package implements the proposed
+#' distributions on the hypersphere based on the tangent-normal decomposition.
+#' It also allows for the replication of the data application considered in
+#' the paper.
 #'
 #' @author Eduardo García-Portugués, Davy Paindaveine, and Thomas Verdebout.
 #' @references
-#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2019) On optimal tests
+#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2020) On optimal tests
 #' for rotational symmetry against new classes of hyperspherical distributions.
-#' \emph{arXiv:1706.05030}. \url{https://arxiv.org/abs/1706.05030}
+#' \emph{Journal of the American Statistical Association}, to appear.
+#' \url{https://doi.org/10.1007/s11222-017-9790-2}
 #' @docType package
 #' @name rotasym-package
 #' @import stats Rcpp

R/tang-norm.R

@@ -75,9 +75,10 @@
 #' numerical accuracy.
 #' @author Eduardo García-Portugués, Davy Paindaveine, and Thomas Verdebout.
 #' @references
-#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2019) On optimal tests
+#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2020) On optimal tests
 #' for rotational symmetry against new classes of hyperspherical distributions.
-#' \emph{arXiv:1706.05030}. \url{https://arxiv.org/abs/1706.05030}
+#' \emph{Journal of the American Statistical Association}, to appear.
+#' \url{https://doi.org/10.1007/s11222-017-9790-2}
 #' @examples
 #' ## Simulation and density evaluation for p = 2
 #'

R/tests.R

@@ -138,9 +138,10 @@
 #' \emph{all} types of alternatives to rotational symmetry.
 #' @author Eduardo García-Portugués, Davy Paindaveine, and Thomas Verdebout.
 #' @references
-#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2019) On optimal tests
+#' García-Portugués, E., Paindaveine, D., Verdebout, T. (2020) On optimal tests
 #' for rotational symmetry against new classes of hyperspherical distributions.
-#' \emph{arXiv:1706.05030}. \url{https://arxiv.org/abs/1706.05030}
+#' \emph{Journal of the American Statistical Association}, to appear.
+#' \url{https://doi.org/10.1007/s11222-017-9790-2}
 #' @examples
 #' ## Rotational symmetry holds
 #'

README.Rmd

@@ -6,7 +6,7 @@ output:
 
 ```{r, echo = FALSE}
 knitr::opts_chunk$set(
-  collapse = TRUE, comment = "#>", fig.path = "README/README-", 
+  collapse = TRUE, comment = "#>", fig.path = "README/README-",
   message = FALSE, warning = FALSE, fig.asp = 1, fig.align = 'center'
 )
 ```
@@ -22,7 +22,7 @@ rotasym
 
 ## Overview
 
-Software companion for the paper "*On optimal tests for rotational symmetry against new classes of hyperspherical distributions*" (García-Portugués, Paindaveine and Verdebout, 2019). It implements the proposed tests for rotational symmetry of hyperspherical data and allows to replicate the data application presented.
+Software companion for the paper "*On optimal tests for rotational symmetry against new classes of hyperspherical distributions*" (García-Portugués, Paindaveine and Verdebout, 2020). It implements the proposed tests for rotational symmetry of hyperspherical data and allows to replicate the data application presented.
 
 ## Installation
 
@@ -85,15 +85,15 @@ test_rotasym(data = data_0, type = "hyb_vMF")
 
 ## Data application: test for the rotational symmetry of sunspots
 
-The data application in García-Portugués, Paindaveine and Verdebout (2019) can
+The data application in García-Portugués, Paindaveine and Verdebout (2020) can
 be reproduced through the script [sunspots-births.R](https://github.com/egarpor/rotasym/blob/master/data-raw/sunspots-births.R) (data gathering and preprocessing) and the code snippet below.
 
 ```{r, sunspots_births}
 # Load data
 data("sunspots_births")
-sunspots_births$X <- 
-  cbind(cos(sunspots_births$phi) * cos(sunspots_births$theta), 
-        cos(sunspots_births$phi) * sin(sunspots_births$theta), 
+sunspots_births$X <-
+  cbind(cos(sunspots_births$phi) * cos(sunspots_births$theta),
+        cos(sunspots_births$phi) * sin(sunspots_births$theta),
         sin(sunspots_births$phi))
 
 # Test rotational symmetry for the 23rd cycle
@@ -114,4 +114,4 @@ example("sunspots_births")
 
 ## References
 
-García-Portugués, E., Paindaveine, D., and Verdebout, T. (2019). On optimal tests for rotational symmetry against new classes of hyperspherical distributions. *arXiv:1706.05030*. <https://arxiv.org/abs/1706.05030>
+García-Portugués, E., Paindaveine, D., and Verdebout, T. (2020). On optimal tests for rotational symmetry against new classes of hyperspherical distributions. *Journal of the American Statistical Association*, to appear. <https://doi.org/10.1007/s11222-017-9790-2>

README.md

@@ -14,7 +14,7 @@ Overview
 
 Software companion for the paper “*On optimal tests for rotational
 symmetry against new classes of hyperspherical distributions*”
-(García-Portugués, Paindaveine and Verdebout, 2019). It implements the
+(García-Portugués, Paindaveine and Verdebout, 2020). It implements the
 proposed tests for rotational symmetry of hyperspherical data and allows
 to replicate the data application presented.
 
@@ -110,16 +110,16 @@ Data application: test for the rotational symmetry of sunspots
 --------------------------------------------------------------
 
 The data application in García-Portugués, Paindaveine and Verdebout
-(2019) can be reproduced through the script
+(2020) can be reproduced through the script
 [sunspots-births.R](https://github.com/egarpor/rotasym/blob/master/data-raw/sunspots-births.R)
 (data gathering and preprocessing) and the code snippet below.
 
 ``` r
 # Load data
 data("sunspots_births")
-sunspots_births$X <- 
-  cbind(cos(sunspots_births$phi) * cos(sunspots_births$theta), 
-        cos(sunspots_births$phi) * sin(sunspots_births$theta), 
+sunspots_births$X <-
+  cbind(cos(sunspots_births$phi) * cos(sunspots_births$theta),
+        cos(sunspots_births$phi) * sin(sunspots_births$theta),
         sin(sunspots_births$phi))
 
 # Test rotational symmetry for the 23rd cycle
@@ -278,7 +278,8 @@ example("sunspots_births")
 References
 ----------
 
-García-Portugués, E., Paindaveine, D., and Verdebout, T. (2019). On
+García-Portugués, E., Paindaveine, D., and Verdebout, T. (2020). On
 optimal tests for rotational symmetry against new classes of
-hyperspherical distributions. *arXiv:1706.05030*.
-<a href="https://arxiv.org/abs/1706.05030" class="uri">https://arxiv.org/abs/1706.05030</a>
+hyperspherical distributions. *Journal of the American Statistical
+Association*, to appear.
+<a href="https://doi.org/10.1007/s11222-017-9790-2" class="uri">https://doi.org/10.1007/s11222-017-9790-2</a>

inst/CITATION

@@ -1,19 +1,38 @@
+
+year <- sub("-.*", "", meta$Date)
+note <- paste("R package version", meta$Version)
+
 citHeader("To cite rotasym in publications use:")
 
+citEntry(entry = "Manual",
+  title        = "{rotasym}: Tests for Rotational Symmetry on the Hypersphere",
+  author       = personList(as.person("Eduardo García-Portugués"),
+                   as.person("Davy Paindaveine"),
+                   as.person("Thomas Verdebout")),
+  year = year,
+  note = note,
+  url = "https://CRAN.R-project.org/package=rotasym",
+  textVersion  =
+  paste("García-Portugués, E., Paindaveine, D., and Verdebout, T. (2020).",
+        "rotasym: Tests for Rotational Symmetry on the Hypersphere.",
+        paste0("R package version ", meta$Version, "."),
+        "https://CRAN.R-project.org/package=rotasym")
+)
+
 citEntry(entry = "Article",
   title        = "On optimal tests for rotational symmetry against new classes of hyperspherical distributions",
   author       = personList(as.person("Eduardo García-Portugués"),
                    as.person("Davy Paindaveine"),
                    as.person("Thomas Verdebout")),
-  journal      = "arXiv:1706.05030",
-  year         = "2019",
-  volume       = "",
+  journal      = "Journal of the American Statistical Association",
+  year         = "2020",
+  volume       = "to appear.",
   number       = "",
   pages        = "",
-  url          = "https://arxiv.org/abs/1706.05030",
+  url          = "https://doi.org/10.1007/s11222-017-9790-2",
   textVersion  =
-  paste("García-Portugués, E., Paindaveine, D., and Verdebout, T. (2019).",
+  paste("García-Portugués, E., Paindaveine, D., and Verdebout, T. (2020).",
         "On optimal tests for rotational symmetry against new classes of hyperspherical distributions.",
-        "arXiv:1706.05030.",
-        "URL https://arxiv.org/abs/1706.05030.")
+        "Journal of the American Statistical Association, to appear.",
+        "https://doi.org/10.1007/s11222-017-9790-2")
 )