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[8.16](backport #42183) libbeat/tests/system: bump python libs to fix issues with Python 3.13 #26394

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[8.16](backport #42183) libbeat/tests/system: bump python libs to fix issues with Python 3.13

[8.16](backport #42183) libbeat/tests/system: bump python libs to fix issues with Python 3.13 #26394

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Job Run time
lint (windows)
8m 19s
lint (linux)
8m 28s
lint (darwin)
1m 31s
18m 18s