Fixed wps issue #132
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Fixed wps issue #132
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update dev from patches
- rename `contig` to `chrom`
- Include `chrom_size` arg for size of `chrom`. This ensures that in the rare case the extra margin from which frags are fetched exceeds the size of a chromosome, no error occurs.
- In `multi_wps`, chrom sizes are read from `chrom_sizes` and fed to subprocesses.
- Defaults for `wps` command changed to be more sensible.
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[0.10.2] - 2024-12-19
Fixed
wpswould lead to errors. Nowwpsdefaults toLWPS fragment lengths (120-180nt).
Changed
finaeltoolkit.utils.typingpublic. This is a module containing someuseful type aliases
fraction_lowandfraction_hightomin_lengthandmax_lengthfor
.utils.frag_arrayand.frag.wps.wpsretains the deprecated arg namesbut issues a warning.