Update test-model.yml #25
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow tests the model on the main branch | |
| name: Model test on push | |
| on: | |
| push: | |
| branches: ["main"] | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| if: github.repository != 'ersilia-os/eos-template' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4.2.2 | |
| with: | |
| lfs: true | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: "3.12" | |
| auto-activate-base: false | |
| - name: Install dependencies | |
| run: | | |
| conda run -n base conda install git-lfs -c conda-forge | |
| conda run -n base git-lfs install | |
| conda run -n base conda install gh -c conda-forge | |
| conda run -n base python -m pip install 'git+https://github.com/ersilia-os/ersilia.git#egg=ersilia[test]' | |
| - name: Update metadata to AirTable | |
| id: update-metadata-to-airtable | |
| env: | |
| USER_NAME: ${{ github.repository_owner }} | |
| BRANCH: "main" | |
| REPO_NAME: ${{ github.event.repository.name }} | |
| AIRTABLE_API_KEY: ${{ secrets.AIRTABLE_API_KEY }} | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 10 | |
| max_attempts: 3 | |
| command: | | |
| source activate | |
| pip install requests pyairtable | |
| echo "Updating metadata to AirTable looking at owner: $USER_NAME" | |
| wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/.github/scripts/airtableops.py | |
| python3 airtableops.py airtable-update --user $USER_NAME --repo $REPO_NAME --branch $BRANCH --api-key $AIRTABLE_API_KEY | |
| rm airtableops.py | |
| - name: Sync metadata to S3 JSON | |
| id: sync-metadata-to-s3 | |
| env: | |
| AIRTABLE_API_KEY: ${{ secrets.AIRTABLE_API_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| run: | | |
| wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/.github/scripts/convert_airtable_to_json.py | |
| pip install boto3 requests pyairtable | |
| python convert_airtable_to_json.py $AIRTABLE_API_KEY $AWS_ACCESS_KEY_ID $AWS_SECRET_ACCESS_KEY | |
| rm convert_airtable_to_json.py | |
| - name: Update README file | |
| id: update-readme-file | |
| env: | |
| MODEL_ID: ${{ github.event.repository.name }} | |
| run: | | |
| conda run -n base bash -c " | |
| echo 'Updating README file with AirTable metadata for model: $MODEL_ID' && | |
| wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/.github/scripts/airtableops.py && | |
| python3 airtableops.py readme-update --repo $MODEL_ID --path . && | |
| rm airtableops.py && | |
| less README.md | |
| " | |
| - name: Commit and push changes done to the README file | |
| uses: actions-js/push@156f2b10c3aa000c44dbe75ea7018f32ae999772 # pin@v1.4 | |
| with: | |
| author_name: "ersilia-bot" | |
| author_email: "ersilia-bot@users.noreply.github.com" | |
| message: "updating readme [skip ci]" | |
| repository: "ersilia-os/${{ github.event.repository.name }}" | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| amend: true | |
| force: true | |
| - name: Fetch model and run it simply | |
| env: | |
| MODEL_ID: ${{ github.event.repository.name }} | |
| run: | | |
| conda run -n base bash -c " | |
| ersilia -v fetch $MODEL_ID --from_github && | |
| ersilia serve $MODEL_ID && | |
| ersilia example -f input.csv -n 3 && | |
| ersilia run -i input.csv -o output.csv && | |
| ersilia close && | |
| ersilia delete $MODEL_ID && | |
| head output.csv | |
| " | |
| # TODO(@dhanshree) We can potentially restore the retries. | |
| # - name: Test model | |
| # env: | |
| # MODEL_ID: ${{ github.event.repository.name }} | |
| # run: | | |
| # ersilia -v test $MODEL_ID --from_github --shallow > test.log | |
| # Upload EOS logs and test logs | |
| - name: Upload log output | |
| if: always() | |
| uses: actions/upload-artifact@v4.5.0 | |
| with: | |
| name: debug-logs | |
| retention-days: 14 | |
| path: | | |
| /home/runner/eos/*.log | |
| ./*.log |