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Bioinformatic pipelines

GATK-SNPs-calling - Genomic variant calling pipeline

GATK-CNVs-calling - Genomic Copy Number variant calling pipeline

RNA-Seq-STAR - RNA-Seq STAR mapping pipeline

DESeq2 - pipeline to perform a differential gene expression analysis with DESeq2

DISCLAIMER: USE THESE SCRIPTS AT YOUR OWN RISK. I MAKE NO WARRANTIES THAT THESE SCRIPTS ARE BUG-FREE, COMPLETE, AND UP-TO-DATE. I AM NOT LIABLE FOR ANY LOSSES IN CONNECTION WITH THE USE OF THESE SCRIPTS.

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Pipelines for various genomic analyses

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