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vargasr39 authored May 30, 2023
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# phase-variation-in-Mtbc
This repository contains the Jupyter Notebooks used in data processing and analysis for the article "Phase variation as a major mechanism of adaptation in Mycobacterium tuberculosis complex" (Vargas et al. 2023, PNAS in-press).

Notebooks were run in order from top to bottom as listed below. Most code was written in Python 2 (with some in Python 3) and running code within these notebooks requires installing the necessary python packages, bioinformatics pipelines & changing the directory paths within the notebooks.
Notebooks were run in order from top to bottom as listed below. Most code was written in Python 2 and running code within these notebooks requires installing the necessary python packages, bioinformatics pipelines & changing the directory paths within the notebooks.

Note: If a notebook doesn't render on GitHub, you can view it by pasting the GitHub hyperlink to it here https://nbviewer.jupyter.org/

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