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@fls-bioinformatics-core

Bioinformatics Core Facility in the Faculty of Biology Medicine and Health at the University of Manchester

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  1. auto_process_ngs auto_process_ngs Public

    Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

    Python 10 6

  2. pegs pegs Public

    PEGS: Peak-set Enrichment of Gene-Sets

    Python 2 1

  3. genomics genomics Public

    Scripts, utilities and programs for genomic bioinformatics.

    Python 83 37

  4. RnaChipIntegrator RnaChipIntegrator Public

    RnaChipIntegrator is a utility that performs integrated analyses of 'gene' data (a set of genes or other genomic features) with 'peak' data (a set of regions, for example ChIP peaks) to identify th…

    Python 5 1

Repositories

Showing 10 of 21 repositories
  • auto_process_ngs Public

    Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

    fls-bioinformatics-core/auto_process_ngs’s past year of commit activity
    Python 10 6 76 3 Updated May 1, 2025
  • sc-gex Public

    BCF's single-cell GEX analysis workflows and Shiny App source code

    fls-bioinformatics-core/sc-gex’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 25, 2025
  • genomics Public

    Scripts, utilities and programs for genomic bioinformatics.

    fls-bioinformatics-core/genomics’s past year of commit activity
    Python 83 37 12 1 Updated Apr 23, 2025
  • Motif2Site Public
    fls-bioinformatics-core/Motif2Site’s past year of commit activity
    R 0 0 0 0 Updated Apr 11, 2025
  • Site2Target Public

    An R package to associate sets of sites/peaks to target genes

    fls-bioinformatics-core/Site2Target’s past year of commit activity
    R 0 0 0 0 Updated Mar 16, 2025
  • ngsarchiver Public

    Utility to archive and manage BCF NGS data

    fls-bioinformatics-core/ngsarchiver’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Feb 7, 2025
  • RnaChipIntegrator Public

    RnaChipIntegrator is a utility that performs integrated analyses of 'gene' data (a set of genes or other genomic features) with 'peak' data (a set of regions, for example ChIP peaks) to identify the genes nearest to each peak, and vice versa

    fls-bioinformatics-core/RnaChipIntegrator’s past year of commit activity
    Python 5 Artistic-2.0 1 4 0 Updated Sep 4, 2024
  • galaxy-tools Public

    FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.

    fls-bioinformatics-core/galaxy-tools’s past year of commit activity
    Shell 14 11 3 4 Updated Mar 20, 2024
  • pegs Public

    PEGS: Peak-set Enrichment of Gene-Sets

    fls-bioinformatics-core/pegs’s past year of commit activity
    Python 2 BSD-3-Clause 1 1 0 Updated Dec 7, 2023
  • NanoDam_analysis-sge Public Forked from AHBrand-Lab/NanoDam_analysis

    R markdowns & scripts accompanying 'Tang, J et al., 2021, bioRxiv'.

    fls-bioinformatics-core/NanoDam_analysis-sge’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Nov 27, 2023
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