Fixed mdtraj version for msmbuilder comp #45

	name: Conda installation

	on:
	push:
	branches:
	- main
	- paper
	- binder

	jobs:
	miniconda:
	name: Miniconda ${{ matrix.os }}
	runs-on: ${{ matrix.os }}-latest
	continue-on-error: true
	strategy:
	matrix:
	os: ["ubuntu", "macos"]
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- uses: actions/checkout@v3
	with:
	submodules: recursive


	- uses: conda-incubator/setup-miniconda@v2
	with:
	miniforge-variant: Mambaforge
	miniforge-version: latest
	python-version: 3.9.16
	activate-environment: anaconda-client-env
	use-mamba: true

	- name: Cache Conda env
	uses: actions/cache@v3
	with:
	path: ${{ env.CONDA }}/envs
	key:
	conda-${{ runner.os }}-${{ runner.arch }}-${{ hashFiles('conda_environment.txt') }}-${{ env.CACHE_NUMBER }}
	env:
	# Increase this value to reset cache if etc/example-environment.yml has not changed
	CACHE_NUMBER: 0
	id: cache

	- name: Update environment
	run: mamba install -n anaconda-client-env --file conda_environment.txt
	if: steps.cache.outputs.cache-hit != 'true'

	- name: Install libexpact in MAC
	run: \|
	mamba install -n base libexpat
	mamba install -n anaconda-client-env libexpat
	if: runner.os == 'macOS'
	# alternatively, install libexpat with conda instead of mamba, or install it in base env last

	- name: Install AlloViz
	run: pip install .

	- name: Test with pytest
	run: \|
	conda install pytest -y
	pytest test/test_submodules.py
	- name: Test pipeline
	run: pytest test/test_pipeline.py
	timeout-minutes: 2
	continue-on-error: true
	- name: Test downloads
	run: pytest test/test_downloads.py
	timeout-minutes: 2
	continue-on-error: true

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