Update test_DesiRNA.yml #83
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| name: DesiRNA Tests | |
| on: | |
| push: | |
| branches: [main, refactoring] | |
| pull_request: | |
| branches: [main, refactoring] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, ubuntu-20.04, macos-latest] | |
| python-version: [3.7, 3.8, 3.9, 3.11] | |
| steps: | |
| - name: Increase Git Config core.longpaths | |
| if: runner.os == 'Windows' | |
| run: git config --system core.longpaths true | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Node.js | |
| uses: actions/setup-node@v2 | |
| with: | |
| node-version: '20.x' | |
| - name: Check Homebrew installation and config | |
| if: runner.os == 'macos' | |
| run: | | |
| which brew | |
| brew --version | |
| brew doctor | |
| - name: Configure Homebrew and gettext | |
| if: runner.os == 'macos' | |
| run: | | |
| brew install gettext | |
| brew link --force gettext | |
| GETTEXT_PATH=$(brew --prefix gettext) | |
| sudo mkdir -p $GETTEXT_PATH/lib | |
| sudo ln -sf $GETTEXT_PATH/lib/libintl.8.dylib /usr/local/lib/ | |
| echo "export PATH=\"$GETTEXT_PATH/bin:\$PATH\"" >> $GITHUB_ENV | |
| echo "export LDFLAGS=\"-L$GETTEXT_PATH/lib\"" >> $GITHUB_ENV | |
| echo "export CPPFLAGS=\"-I$GETTEXT_PATH/include\"" >> $GITHUB_ENV | |
| echo "export DYLD_LIBRARY_PATH=\"$GETTEXT_PATH/lib:\$DYLD_LIBRARY_PATH\"" >> $GITHUB_ENV | |
| - name: Debug environment settings | |
| if: runner.os == 'macos' | |
| run: | | |
| echo "Checking DYLD_LIBRARY_PATH:" | |
| echo $DYLD_LIBRARY_PATH | |
| ls -l $GETTEXT_PATH/lib/ | |
| ls -l /usr/local/lib/libintl.8.dylib | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: x64 # Explicitly specify architecture if necessary | |
| - name: Cache pip dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| shell: bash | |
| - name: Run DesiRNA tests | |
| run: bash ./tests/test_DesiRNA.sh | |
| - name: Run DesiRNA error handling tests | |
| run: bash ./tests/test_DesiRNA_errors.sh |