Pre-commit hook, resolve formatting changes

ga4gh · Feb 17, 2025 · 0475989 · 0475989
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diff --git a/schema/cat-vrs/def/CategoricalVariant.rst b/schema/cat-vrs/def/CategoricalVariant.rst
@@ -22,59 +22,59 @@ Some CategoricalVariant attributes are inherited from :ref:`gks-core:Entity`.
       - Limits
       - Description
    *  - id
-      - 
+      -
       - string
       - 0..1
       - The 'logical' identifier of the Entity in the system of record, e.g. a UUID.  This 'id' is unique within a given system, but may or may not be globally unique outside the system. It is used within a system to reference an object from another.
    *  - name
-      - 
+      -
       - string
       - 0..1
       - A primary name for the entity.
    *  - description
-      - 
+      -
       - string
       - 0..1
       - A free-text description of the Entity.
    *  - aliases
-      - 
+      -
                         .. raw:: html
 
                             <span style="background-color: #B2DFEE; color: black; padding: 2px 6px; border: 1px solid black; border-radius: 3px; font-weight: bold; display: inline-block; margin-bottom: 5px;" title="Unordered">&#8942;</span>
       - string
       - 0..m
       - Alternative name(s) for the Entity.
    *  - extensions
-      - 
+      -
                         .. raw:: html
 
                             <span style="background-color: #B2DFEE; color: black; padding: 2px 6px; border: 1px solid black; border-radius: 3px; font-weight: bold; display: inline-block; margin-bottom: 5px;" title="Unordered">&#8942;</span>
       - :ref:`Extension`
       - 0..m
       - A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.
    *  - type
-      - 
+      -
       - string
       - 1..1
       - MUST be "CategoricalVariant"
    *  - members
-      - 
+      -
                         .. raw:: html
 
                             <span style="background-color: #B2DFEE; color: black; padding: 2px 6px; border: 1px solid black; border-radius: 3px; font-weight: bold; display: inline-block; margin-bottom: 5px;" title="Unordered">&#8942;</span>
       - :ref:`Variation` | :ref:`iriReference`
       - 0..m
       - A non-exhaustive list of VRS Variations that satisfy the constraints of this categorical variant.
    *  - constraints
-      - 
+      -
                         .. raw:: html
 
                             <span style="background-color: #B2DFEE; color: black; padding: 2px 6px; border: 1px solid black; border-radius: 3px; font-weight: bold; display: inline-block; margin-bottom: 5px;" title="Unordered">&#8942;</span>
       - :ref:`Constraint`
       - 0..m
-      - 
+      -
    *  - mappings
-      - 
+      -
                         .. raw:: html
 
                             <span style="background-color: #B2DFEE; color: black; padding: 2px 6px; border: 1px solid black; border-radius: 3px; font-weight: bold; display: inline-block; margin-bottom: 5px;" title="Unordered">&#8942;</span>

diff --git a/schema/cat-vrs/def/Constraint.rst b/schema/cat-vrs/def/Constraint.rst
@@ -21,7 +21,7 @@ Constraints are used to construct an intensional semantics of categorical varian
       - Limits
       - Description
    *  - type
-      - 
+      -
       - string
       - 1..1
-      - 
+      -
diff --git a/schema/cat-vrs/def/CopyChangeConstraint.rst b/schema/cat-vrs/def/CopyChangeConstraint.rst
@@ -22,12 +22,12 @@ Some CopyChangeConstraint attributes are inherited from :ref:`Constraint`.
       - Limits
       - Description
    *  - type
-      - 
+      -
       - string
       - 1..1
       - MUST be "CopyChangeConstraint"
    *  - copyChange
-      - 
+      -
       - string
       - 1..1
       - The relative assessment of the change in copies that members of this categorical variant satisfies.
diff --git a/schema/cat-vrs/def/CopyCountConstraint.rst b/schema/cat-vrs/def/CopyCountConstraint.rst
@@ -22,12 +22,12 @@ Some CopyCountConstraint attributes are inherited from :ref:`Constraint`.
       - Limits
       - Description
    *  - type
-      - 
+      -
       - string
       - 1..1
       - MUST be "CopyCountConstraint"
    *  - copies
-      - 
+      -
       - integer | :ref:`Range`
       - 1..1
       - The precise value or range of copies members of this categorical variant must satisfy.
diff --git a/schema/cat-vrs/def/DefiningAlleleConstraint.rst b/schema/cat-vrs/def/DefiningAlleleConstraint.rst
@@ -22,17 +22,17 @@ Some DefiningAlleleConstraint attributes are inherited from :ref:`Constraint`.
       - Limits
       - Description
    *  - type
-      - 
+      -
       - string
       - 1..1
       - MUST be "DefiningAlleleConstraint"
    *  - allele
-      - 
+      -
       - :ref:`Allele` | :ref:`iriReference`
       - 1..1
-      - 
+      -
    *  - relations
-      - 
+      -
                         .. raw:: html
 
                             <span style="background-color: #B2DFEE; color: black; padding: 2px 6px; border: 1px solid black; border-radius: 3px; font-weight: bold; display: inline-block; margin-bottom: 5px;" title="Unordered">&#8942;</span>

diff --git a/schema/cat-vrs/def/DefiningLocationConstraint.rst b/schema/cat-vrs/def/DefiningLocationConstraint.rst
@@ -22,25 +22,25 @@ Some DefiningLocationConstraint attributes are inherited from :ref:`Constraint`.
       - Limits
       - Description
    *  - type
-      - 
+      -
       - string
       - 1..1
       - MUST be "DefiningLocationConstraint"
    *  - location
-      - 
+      -
       - :ref:`SequenceLocation` | :ref:`iriReference`
       - 1..1
-      - 
+      -
    *  - relations
-      - 
+      -
                         .. raw:: html
 
                             <span style="background-color: #B2DFEE; color: black; padding: 2px 6px; border: 1px solid black; border-radius: 3px; font-weight: bold; display: inline-block; margin-bottom: 5px;" title="Unordered">&#8942;</span>
       - :ref:`MappableConcept`
       - 0..m
       - Defined relationships from which members relate to the defining location.
    *  - matchCharacteristic
-      - 
+      -
       - :ref:`MappableConcept`
       - 1..1
       - A characteristic of the location that is used to match the defining location to member locations.
diff --git a/schema/cat-vrs/def/FeatureContextConstraint.rst b/schema/cat-vrs/def/FeatureContextConstraint.rst
@@ -22,12 +22,12 @@ Some FeatureContextConstraint attributes are inherited from :ref:`Constraint`.
       - Limits
       - Description
    *  - type
-      - 
+      -
       - string
       - 1..1
       - MUST be "FeatureContextConstraint"
    *  - featureContext
-      - 
+      -
       - :ref:`MappableConcept`
       - 1..1
       - A feature identifier.
diff --git a/schema/cat-vrs/def/FunctionConstraint.rst b/schema/cat-vrs/def/FunctionConstraint.rst
@@ -22,18 +22,18 @@ Some FunctionConstraint attributes are inherited from :ref:`Constraint`.
       - Limits
       - Description
    *  - type
-      - 
+      -
       - string
       - 1..1
       - MUST be "FunctionConstraint"
    *  - functionConsequence
-      - 
+      -
       - string
       - 1..1
       - A categorical label of the function change that members of this categorical variant satisfies, using ontology terms from `The Sequence Ontology <http://www.sequenceontology.org>`_. MUST be `"SO:0002052" <http://www.sequenceontology.org/browser/current_release/term/SO:0002052>`_, `"SO:0002054" <http://www.sequenceontology.org/browser/current_release/term/SO:0002054>`_, `"SO:0001561" <http://www.sequenceontology.org/browser/current_release/term/SO:0001561>`_, `"SO:0002219" <http://www.sequenceontology.org/browser/current_release/term/SO:0002219>`_, `"SO:0001557" <http://www.sequenceontology.org/browser/current_release/term/SO:0001557>`_, or `"SO:0002053" <http://www.sequenceontology.org/browser/current_release/term/SO:0002053>`_.
 
    *  - description
-      - 
+      -
       - string
       - 0..1
       - A free-text description of the function change.
diff --git a/schema/cat-vrs/json/CanonicalAllele b/schema/cat-vrs/json/CanonicalAllele
@@ -55,4 +55,4 @@
          }
       }
    ]
-}
+}
diff --git a/schema/cat-vrs/json/CategoricalCnv b/schema/cat-vrs/json/CategoricalCnv
@@ -55,4 +55,4 @@
          }
       }
    ]
-}
+}
diff --git a/schema/cat-vrs/json/CategoricalVariant b/schema/cat-vrs/json/CategoricalVariant
@@ -97,4 +97,4 @@
       "type"
    ],
    "additionalProperties": false
-}
+}
diff --git a/schema/cat-vrs/json/Constraint b/schema/cat-vrs/json/Constraint
@@ -25,4 +25,4 @@
          "$ref": "/ga4gh/schema/cat-vrs/1.x/json/FunctionConstraint"
       }
    ]
-}
+}
diff --git a/schema/cat-vrs/json/CopyChangeConstraint b/schema/cat-vrs/json/CopyChangeConstraint
@@ -32,4 +32,4 @@
       "type"
    ],
    "additionalProperties": false
-}
+}
diff --git a/schema/cat-vrs/json/CopyCountConstraint b/schema/cat-vrs/json/CopyCountConstraint
@@ -29,4 +29,4 @@
       "type"
    ],
    "additionalProperties": false
-}
+}
diff --git a/schema/cat-vrs/json/DefiningAlleleConstraint b/schema/cat-vrs/json/DefiningAlleleConstraint
@@ -36,4 +36,4 @@
       "type"
    ],
    "additionalProperties": false
-}
+}
diff --git a/schema/cat-vrs/json/DefiningLocationConstraint b/schema/cat-vrs/json/DefiningLocationConstraint
@@ -41,4 +41,4 @@
       "type"
    ],
    "additionalProperties": false
-}
+}
diff --git a/schema/cat-vrs/json/FeatureContextConstraint b/schema/cat-vrs/json/FeatureContextConstraint
@@ -22,4 +22,4 @@
       "type"
    ],
    "additionalProperties": false
-}
+}
diff --git a/schema/cat-vrs/json/FunctionConstraint b/schema/cat-vrs/json/FunctionConstraint
@@ -34,4 +34,4 @@
       "type"
    ],
    "additionalProperties": false
-}
+}
diff --git a/schema/cat-vrs/json/FunctionVariant b/schema/cat-vrs/json/FunctionVariant
@@ -32,4 +32,4 @@
          ]
       }
    ]
-}
+}
diff --git a/schema/cat-vrs/json/ProteinSequenceConsequence b/schema/cat-vrs/json/ProteinSequenceConsequence
@@ -43,4 +43,4 @@
          }
       }
    ]
-}
+}
-Original file line number
+Diff line change
@@ Expand Up @@
           - Limits
           - Description
        *  - type
-          -
+          -
           - string
           - 1..1
-          -
+          -